Supplementary data for the publication "Large-Scale Transcriptional Activity in Chromosomes 21 and 22"

Supplemental notes and references
Table S1
Table S2
Figure S3
Legend for Figure S3

All of the raw data which was used in this publication is available here, along with descriptions of the file formats and data types available. The full data set comes to a total of just under 2 Gigabytes, after compression.

If you are interested in obtaining the entire dataset here are some tips for doing so.

Alternatively, if you would like to just browse around, the data will soon be visualized on the April 2001 assembly at the UC Santa Cruz Genome Browser (thanks to the efforts of Chuck Sugnet, Ryan Weber and the rest of the UCSC team). We will put up links to some interesting examples as soon as possible. In the meantime, here are some static screen shots of what is being put together on the UCSC site:

Example 1 No match to known ESTs/genes, but good correspondance with mouse and fish in all 11 cell lines.
Example 2 Detection of known gene RANBP1 in all 11 cell lines.
Example 3 No ESTs/genes, but close correspondance with mouse hits.
Example 4 Detection of known gene ADAMTS1 in 4 of the 11 cell lines (FHs-738Lu, PC3, SK-N-AS, U-87MG).
Example 5 Detection of known gene APP in all cell lines except CCRF-Cem.
Example 6 Detection of predicted gene (similar to proline oxidase) in NCCIT cell line.
Example 7 No match to known genes or spliced ESTs, match to unspliced ESTs and mouse hits in all 11 cell lines.