A white paper is an authoritative report. White papers are meant to educate users by revealing, in great technical detail, the features and benefits of a particular technology, product, or application.
Arrays
- Alternative Transcript Analysis Methods for Exon Arrays v1.1 (pdf, 79 KB)
- BRLMM Algorithm for Affymetrix Mapping Arrays (pdf, 278 KB)
- BRLMM-P: a Genotype Calling Method for the SNP 5.0 Array (pdf, 163 KB)
- DMET™ Plus Allele Translation (pdf, 740 KB)
- Drosophila Tiling 2.0R Array Design and Library files (pdf, 59 KB)
- Exon Array Background Correction v1.0 (pdf, 78 KB)
- Exon Probeset Annotations and Transcript Cluster Groupings v1.0 (pdf, 87 KB)
- Exon Related Changes FAQ (pdf, 268 KB)
- Gene Signal Estimates from Exon Arrays v1.0 (pdf, 428 KB)
- Genotyping Console™ Quality Control Assessment (pdf, 1.07 MB)
- HT and Cartridge IVT Expression Arrays (pdf, 601 KB)
- Human Gene 1.0 ST Array Performance (pdf, 620 KB)
- Microarray Platform Comparisons - Commentary (pdf, 492 KB)
- Performance Evaluation of the GeneChip® HT Array Plate Scanner (pdf, 1.96MB)
- Quality Assessment of Exon and Gene 1.0 ST Arrays (pdf, 180 KB)
- Single Sample Analysis Methodology for DMET™ Plus Premier Pack (pdf, 568 KB)
- Targeted Genotyping Algorithm Enhancements for Release 1.5 (pdf, 21 KB)
- Whole Transcript (WT) Sense Target Labeling Assay Performance (pdf, 652 KB)
Reagents & Assays
- 3' IVT Express Kit (pdf, 740 KB)
- BRLMM Algorithm for Affymetrix Mapping Arrays (pdf, 278 KB)
- HT 3' IVT Express Kit (pdf, 1.29 MB)
- New GeneChip® Hybridization, Wash, and Stain Kit reagents provide equivalent array performance (pdf, 499 KB)
- Targeted Genotyping Algorithm Enhancements for Release 1.5 (pdf, 21 KB)
- Technical Performance of the Ambion® WT Expression Kit (pdf, 1.81 MB)
Instruments
- HT and Cartridge IVT Expression Arrays (pdf, 601 KB)
- Performance Evaluation of the GeneChip® HT Array Plate Scanner (pdf, 1.96MB)
- Targeted Genotyping Algorithm Enhancements for Release 1.5 (pdf, 21 KB)
Software
- Alternative Transcript Analysis Methods for Exon Arrays v1.1 (pdf, 79 KB)
- BRLMM Algorithm for Affymetrix Mapping Arrays (pdf, 278 KB)
- BRLMM-P: a Genotype Calling Method for the SNP 5.0 Array (pdf, 163 KB)
- Canary Algorithm Version 1.0 (pdf, 88.5 KB)
- Copy Number Algorithm with Built-in GC Waviness Correction (pdf, 864 KB)
- Exon Array Background Correction v1.0 (pdf, 78 KB)
- Exon Probeset Annotations and Transcript Cluster Groupings v1.0 (pdf, 87 KB)
- Exon Related Changes FAQ (pdf, 268 KB)
- Gene Signal Estimates from Exon Arrays v1.0 (pdf, 428 KB)
- Genotyping Console™ Quality Control Assessment (pdf, 1.07 MB)
- IVT Annotation Generation in NetAffx (pdf, 66k)
- Improved Gridding Algorithms in AGCC Produce Equivalent Biological Results (pdf, 82 KB)
- Investigating Data With NetAffx (pdf, 941k)
- MAPD and Quality Control in GTC 2.0 (pdf, 193 KB)
- Negligible Data Impact Due to Ecoli and Ecoli_ASv2 Library File Change (pdf, 38 KB)
- Statistical Algorithms Description Document (pdf, 216 KB)
- Targeted Genotyping Algorithm Enhancements for Release 1.5 (pdf, 21 KB)
- The Loss of Heterozygosity (LOH) Algorithm in Genotyping Console 2.0 (pdf, 165 KB)
- Using the NetAffx® SDK XML Feed for Notification of Annotation or Library File Updates (pdf, 121 KB)
