Affymetrix - Sample Data for GeneChip® Arrays



		Sample Data for GeneChip® Arrays

The following files contain compressed versions of .DTT Archive files that can be imported into GeneChip Operating Software (GCOS) using Data Transfer Tool (DTT) version 1.1 or higher.

Please note: Sample data is no longer provided in individual files or in .CAB file format, and is thus not compatible with Microarray Suite (MAS) or with versions of GCOS that do not have DTT version 1.1 or higher installed.

In order to import the sample data into GCOS, the appropriate library files for the probe array type must first be installed.

A .zip file extractor utility (for example, WinZip) is required for accessing the contents of these files. If your workstation does not have this type of software program installed, or if you are unfamiliar with the process of “unzipping” files, please consult with your Information Technology (IT) or Computer Support department.

Data contained on this page is stored in a ZIP file containing either a DTT archive or a collection of EXP, CEL, & CHP files. Collections of EXP, CEL, & CHP files cannot be imported into GCOS and are provided for use in software applications handling flat files as data inputs

After downloading a sample data .zip file, unzip the file to access the .DTT Archive file. Then, import the data using DTT version 1.1 or higher, selecting the .DTT Archive option. For more information on importing data into GCOS from a .DTT Archive file, please refer to the Affymetrix Data Transfer Tool User's Guide.

Please note: These files are very large.

Data Files

GCOS Data	Affymetrix GeneChip® Command Console Data	Description


Demo_Data_Arabidopis-AG (zip, 35 MB)	Demo_Data_Arabidopsis-AG_AGCC (zip, 28 MB)	Single probe array files for the Arabidopsis ATH1 Genome Array (collaboration with TIGR). Library File Array Support Page
Demo_Data_Barley_MAS5 (zip, 63 MB)	Demo_Data_Barley_AGCC (zip, 62 MB)	Replicate probe array files for the Barley Genome Array. Library File Array Support Page
Demo_Data_Bovine (zip, 75 MB)	Demo_Data_Bovine_AGCC (zip, 75 MB)	Replicate probe array files for the Bovine Genome Array. Library File Array Support Page
Demo_Data_Canine (zip, 79 MB)	Demo_Data_Canine_AGCC (zip, 79 MB)	Replicate probe array files for the Canine Genome Array. Library File Array Support Page
Demo_Data_Canine 2.0 (zip, 12 MB)	Demo_Data_Canine 2.0_AGCC (zip, 7.08 MB)	Two biological replicates of normal adult canine liver (in collaboration with the NIH). Library File Array Support Page
Demo_Data_Chicken (zip, 28 MB)	Demo_Data_Chicken_AGCC (zip, 6.9 MB)	Replicate probe array files for the Chicken Genome Array. Library File Array Support Page
Demo_Data_Citrus (zip, 26 MB)	Demo_Data_Citrus_AGCC (zip, 7.3 MB)	Replicate probe array files for the Citrus Genome Array. Library File Array Support Page
Demo_Data_Cotton (zip, 19 MB)	Demo_Data_Cotton_AGCC (zip, 4.8 MB)	Replicate probe array files for the Cotton Genome Array. Library File Array Support Page
Demo_Data_Drosophila (zip, 33 MB)	Demo_Data_Drosophila_AGCC (zip, 28 MB)	Single probe array files for the Drosophila Genome Arrray. Library File Array Support Page
Demo_DataAG_DrosTest3-Yeast (zip, 16 MB)
Demo_Data_E-coli-antisense (zip, 30 MB)	Demo_Data_E-coli-antisense_AGCC (zip, 27 MB)	Single probe array files for the E. coli Antisense Genome Array. Library File Array Support Page
Demo_Data_Focus-Ecoli (zip, 8.9 MB)
Demo_Data_Maize (zip, 19 MB)	Demo_Data_Maize_AGCC (zip, 4.9 MB)	Replicate probe array files for the Maize Genome Array. Library File Array Support Page
Demo_Data_HG-U133 (zip, 29 MB)
Demo_Data_MG-U74 (zip, 31 MB)
Demo_Data_Mouse 430 (zip, 19 MB)		Single probe array files for Mouse 430 (A & B) arrays. Library File Array Support Page
Demo_Data_Soybean (zip, 169 MB)	Demo_Data_Soybean_AGCC (zip, 162 MB)	Replicate probe array files for the Soybean Genome Array. Library File Array Support Page
Demo_Data_Vitis (zip, 82 MB)	Demo_Data_Vitis_AGCC (zip, 82 MB)	Replicate probe array files for the Vitis Vinifera (grape) Genome Array. Library File Array Support Page
Demo_Data_Wheat (zip, 200 MB)	Demo_Data_Wheat_AGCC (zip, 200 MB)	Replicate probe array files for the Wheat Genome Array. Library File Array Support Page
Demo_Data Yeast (zip, 63 MB)	N/A	Replicate array files for the Yeast Genome (YG-S98) S98 Array. Library File Array Support Page
Demo_Data_Zebrafish (zip, 54 MB)	Demo_Data_Zebrafish_AGCC (zip, 54 MB)	Replicate probe array files for the Zebrafish Genome Array. Library File Array Support Page
Demo_Data_RG-U34 (zip, 19 MB)		EXP, CEL, & CHP files for Tissue panel on Rat U34 A, B, & C arrays.
Demo_Data_Rat 230 (zip, 26 MB)		Replicate EXP, CEL, & CHP files for Rat 230 A and B arrays.
ArrayAssist Lite CHP files (zip, 35 MB)		Note: PLIER CHP files have a variance stabilization component included which is separate from the Affymetrix PLIER SDK.
	Demo_Data_MPRO_AGCC_daily (zip, 47 MB)	A daily time course of Neutrophil Differentiation using Murine U74A arrays. Data courtesy of Awad and Collins.
	Demo_Data_MPRO_AGCC_hourly (zip, 33 MB)	An hourly time course of Neutrophil Differentiation using Murine U74A arrays. Data courtesy of Awad and Collins.