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100K Mapping Assay Manual (pdf, 1.2 MB) |
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10K 2.0 Mapping Assay Manual (pdf, 1.2 MB) |
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Affymetrix® Human SNP Assay 6.0 User Guide for Automated Target Preparation (pdf, 2.62 MB) |
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Alignment Data in PSL Format |
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BRLMM - Apt-Probeset-Genotype (pdf, 223 KB) |
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Chromatin Immunoprecipitation Assay Protocol (pdf, 679 KB) |
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CustomSeq® Resequencing Array Design Guide (pdf, 329 KB) |
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CustomSeq® Resequencing Array Protocol (pdf, 716 KB) |
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Expression Analysis Technical Manual |
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Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 2.1 MB) |
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Genome-Wide Human SNP Nsp/Sty 6.0 User Guide (pdf, 2.16 MB) |
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Genome-Wide Human SNP Nsp/Sty Assay 5.0 (pdf, 2.46 MB) |
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Mapping 500K Assay Manual (pdf, 3.4 MB) |
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Probe Set Data in MAGE-ML Format |
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ToxFX™ Analysis Suite Manual (pdf, 1.0 MB) |
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Whole Transcript (WT) Double-Stranded Target Assay (pdf, 751 KB) |
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Whole Transcript (WT) Sense Target Labeling Assay (pdf, 1.12 MB) |
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Affymetrix® Human SNP Assay 6.0 User Guide for Automated Target Preparation (pdf, 2.62 MB) |
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Expression Analysis Technical Manual |
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Expression Analysis Technical Manual - Cartridge Arrays Using the Array Station (pdf, 4.5 MB) |
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Expression Analysis Technical Manual - Plate Arrays Using the Array Station (pdf, 8.7 MB) |
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Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 2.1 MB) |
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Globin-Reduction Protocol (pdf, 495 KB) |
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Targeted Genotyping Analysis (GTGS) User's Guide, includes TG protocol (pdf, 1.9 MB) |
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Targeted Genotyping System Site Preparation Guide (pdf, 892 KB) |
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Targeted Genotyping System User's Guide (pdf, 4.04 MB) |
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Whole Transcript (WT) Double-Stranded Target Assay (pdf, 751 KB) |
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Whole Transcript (WT) Sense Target Labeling Assay (pdf, 1.12 MB) |
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Array Plate Scanner Site Preparation Guide (pdf, 382 KB) |
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Array Plate Scanner User Guide (pdf, 5.27 MB) |
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Array Station User's Guide (pdf, 2.77 MB) |
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Array Station, Site Preparation Guide (pdf, 352 KB) |
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Array Station, Site Preparation Guide (pdf, 352 KB) |
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Expression Analysis Technical Manual - Cartridge Arrays Using the Array Station (pdf, 4.5 MB) |
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Expression Analysis Technical Manual - Plate Arrays Using the Array Station (pdf, 8.7 MB) |
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Fluidics Station 400 Manual (pdf, 751 KB) |
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Fluidics Station 450 Manual (zip, 3.7 MB) |
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GeneChip QC Toolbox Manual (pdf, 898 KB) |
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GeneChip® Array Station Manuals |
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Hybridization Oven Manual (pdf, 128 KB) |
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Targeted Genotyping System User's Guide (pdf, 4.04 MB) |
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BRLMM-P - SNP 5 - Geno-QC (pdf, 30 KB) |
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Command Console® Software (AGCC) 1.1 User's Guide (pdf, 12.7 MB) |
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Command Console® Software (AGCC) Workgroup Addendum (pdf, 1.5 MB) |
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Data Analysis Fundamentals (pdf, 1 MB) |
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Data Exchange Console 1.1 (pdf, 1.3 MB) |
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Data Transfer Tool User Guide (pdf, 966 KB) |
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Direct Access To Probe Set Information |
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Exon Array Computational Tool Software User's Guide (zip 872 KB) |
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Expression Console™ Software (pdf, 4.1 MB) |
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GeneChip® DNA Analysis Software (zip, 4.2 MB) |
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GeneChip® Operating Software Manual (zip, 11 MB) |
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GeneChip® Operating Software Server Installation and Administration Guide (zip, 6.6 MB) |
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GeneChip® Sequence Analysis Software User's Guide (pdf, 2.4 MB) |
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Genome-Wide Human SNP Nsp/Sty 6.0 User Guide (pdf, 2.16 MB) |
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Genotyping Analysis Software (GTYPE) (pdf, 4.7 MB) |
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Genotyping Console 2.1 User Manual (pdf, 4.68 MB) |
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Genotyping Console Browser User Manual (pdf, 1.64 MB) |
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How to Export Signal Values with Annotation Information (pdf, 95 KB) |
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Probe Match Manual (pdf, 50 KB) |
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Quick Start Guide for 3' Expression Arrays (pdf, 90 KB) |
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Quick Start Guide for Exon Arrays (pdf, 153 KB) |
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Quick Start Guide for the Human Gene 1.0 ST Array (pdf, 137 KB) |
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Reconnector 1.0 (pdf, 1.3 MB) |
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Targeted Genotyping Analysis (GTGS) User's Guide, includes TG protocol (pdf, 1.9 MB) |
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Targeted Genotyping System Site Preparation Guide (pdf, 892 KB) |
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Targeted Genotyping System User's Guide (pdf, 4.04 MB) |
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User Guide, Copy Number Analysis Tool (pdf, 2.2 MB) |
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Utilizing Data Transfer Tool for Windows XP Service Pack 2 (pdf, 1.4 MB) |
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Utilizing GCOS for Windows XP Service Pack 2 (pdf, 1.4 MB) |
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