Instructions
WinZip is required for accessing the files. Download and install a free evaluation version of WinZip, then download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip and begin the installation.
For large files, you may wish to use a free download manager. Simply download the program and double click on the Affymetrix file you wish to access. The manager will allow you to speed up, schedule, and pause/resume any downloads from the site.
GeneAtlas™ Array Strips
The following array strip library files are for use with the GeneAtlas system and GeneAtlas Instrument Control Software. If you have an internet connection from the GeneAtlas instrument control computer workstation you can automatically download and install these files by following the instructions for installing library files in the GeneAtlas User's Guide. If you do not have access to the internet from the instrument control workstation download the library file *.zip file of interest, copy it to the instrument control workstation and extract the contents of the *.zip file to C:\Command_Console\Library.
3'IVT Gene Expression Array Strips
WT Whole Transcript Gene Expression Array Strips
- Human Gene 1.1 ST Array Plate and Strip, Analysis (zip, 17 MB)
- Mouse Gene 1.1 ST Array Plate and Strip, Analysis (zip, 18 MB)
- Rat Gene 1.1 ST Array Plate and Strip, Analysis (zip, 16.7 MB)
Array Plate Library files
GeneTitan™ and GeneTitan MC Instrument and AGCC 3.x Software
The following array plate library files are intended for use with AGCC 3.x and higher for use with the GeneTitan family of instruments. Please note that the library files in this section cannot be used with AGCC 2.x. To find out which version of AGCC version is installed on your system, visit the AGCC Portal web page and observe the version number in the Help > About page.
Download the zip file and save the file to a folder on the workstation. Start the GeneTitan library file installer from the AGCC launcher window and set the source path in the application to the folder containing the array plate zip files. Start the install. Please note that the data files in the zip should not be extracted or uncompressed. The zip file must be saved as is with the .zip extension. Please refer to the AGCC user manual for additional information.
- AGCC 3.x Axiom ASI Array Plate GeneTitan MC library files (zip, 14 KB)
- AGCC 3.x Axiom CEU Array Plate GeneTitan MC library files (zip, 14 KB)
- AGCC 3.x Axiom CHB Array Plate GeneTitan MC library files (zip, 10 KB)
- AGCC 3.x Axiom™ Genome-Wide BOS 1 Array Plate, GeneTitan MC library files (zip, 12 KB)
- AGCC 3.x HT HG-U133A Library Files (zip, 12MB)
- AGCC 3.x HT HG-U133B Library Files (zip, 12MB)
- AGCC 3.x HT HG-U133PM Plus and HG-U133 Array Strip Library Files (zip, 13.9 MB)
- AGCC 3.x HT MG-430A Library Files (zip, 12MB)
- AGCC 3.x HT MG-430B Library Files (zip, 11MB)
- AGCC 3.x HT Rat-Focus Library Files (zip, 11.9 MB)
- AGCC 3.x HuGene-1_1-ST-V1 Library Files (zip, 194 KB)
- AGCC 3.x MoGene-1_1-ST-V1 Library Files (zip, 338 KB)
- AGCC 3.x RaGene-1_1-ST-V1 Library Files (zip, 448 KB)
HTAPS Scanner and GCOS Software
The following array plate library files are intended for use with GeneChip Operating Software (GCOS). WinZip is required for accessing the files. Download and install a free evaluation version of WinZip, then download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip and begin the installation.
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT Rat-Focus Array (zip, 14 MB)
GeneChip® Array Cartridges
WinZip is required for accessing the files. Download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip, extract the files, and begin the installation.
DNA Analysis Arrays
Catalog Arrays
- ChAS Analysis Files for the CytoScan™ HD Array (zip, 1.08 GB)
- ChAS Analysis Files for the Cytogenetics Array (zip, 632 MB)
- DMET™ Plus Library Files (zip, 7.62 MB)
- DMET™ Template for AGCC (zip, 145KB 3/10)
- Genome-Wide Human SNP Array 5.0 (zip, 90 MB)
- Genome-Wide Human SNP Array 5.0, Alternative CDF Files (zip, 70 MB)
- Genome-Wide Human SNP Array 6.0 (zip, 246 MB)
- Mapping 10K 2.0 Array (zip, 9.1 MB)
- Mapping 250K Nsp Array (zip, 43 MB)
- Mapping 250K Sty Array (zip, 42 MB)
- Mapping 50K Hind 240 Array (zip, 16 MB)
- Mapping 50K Xba 240 Array (zip, 17 MB)
- Mouse Diversity Array, AGCC Library Files (zip, 80.1 MB)
- Mouse Diversity Array, Analysis Files (zip, 112 MB)
- Mouse Diversity Array, Annotation Converter (zip, 4 KB)
- Tag 3 Array (zip, 3.3 MB)
- Universal 10K Tag Array (zip, 1.8 MB)
- Universal 25K Tag Array (zip, 1.85 MB)
- Universal 3K Tag Array (zip 1.8 MB)
- Universal 5K Tag Array (zip 1.8 MB)
- Universal 70K Tag Array (zip, 2.16 MB)
Made to Order Array Program
Gene Expression Analysis Arrays
Catalog Arrays
- Arabidopsis ATH1 Genome Array (zip, 13 MB)
- Arabidopsis Tiling 1.0R Array (zip, 120 MB)
- Bovine Genome Array (zip, 13MB)
- C elegans Genome Tiling Array ce4 BPMAP files
- C. elegans Genome Array (zip, 12 MB)
- C. elegans Tiling 1.0R Array (zip, 122 MB)
- Canine 2.0 Genome Array (zip, 22 MB)
- Chicken Genome Array Array (zip, 20 MB)
- Chromosome 21/22 1.0 Array Set (zip, 55 MB)
- Chromosome 21/22 2.0R Array (zip 87 MB)
- Citrus Genome Array (zip, 20 MB)
- Cotton Genome Array (zip, 14 MB)
- Drosophila Genome 2.0 Array (zip, 13 MB)
- Drosophila Genome Array (zip, 10 MB)
- Drosophila Tiling 1.0R Array (zip, 124 MB)
- Drosophila Tiling 2.0R Array (zip, 114 MB)
- E. coli Antisense Genome Array (zip, 7.8 MB)
- E.coli Genome 2.0 Array (zip, 7.5 MB)
- ENCODE 2.0R Array (zip, 84 MB)
- GeneChip Tiling Arrays - Data Analysis Library File Updates
- HG-U219 Expression Console ™ Software Report Controls File
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT MG-430 PM Array Plate and Array Strip Library File (zip, 12 MB)
- HT Rat-Focus Array (zip, 14 MB)
- HT_HG-U133_Plus_PM Expression Console ™ Software Report Controls File Note: This file corrects an error associated with tracking
- HT_MG-430_PM Expression Console ™ Software Report Controls File
- HT_Rat230_PM Expression Console ™ Software Report Controls File
- Human Exon 1.0 ST Array Analysis (zip, 131 MB)
- Human Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive hg18 (zip, 13 MB)
- Human Exon 1.0 ST Array, GCOS (zip, 2.2 MB)
- Human Gene 1.0 ST Array, Analysis (zip, 18 MB)
- Human Gene 1.0 ST Array, GCOS (2.18 MB)
- Human Gene 1.1 ST Array Plate and Strip, Analysis (zip, 17 MB)
- Human Genome 2.0 Tiling Array Set NCBIv36 BPMAP files
- Human Genome 2.0 Tiling Array Set NCBIv36 BPMAP files
- Human Genome Focus Array (zip, 6.7 MB)
- Human Genome U133 Plus 2.0 Array (zip, 30 MB)
- Human Genome U133 Set (zip, 25 MB)
- Human Genome U133A 2.0 Array (zip, 13 MB)
- Human Promoter 1.0R Array (zip, 132 MB)
- Human Promoter Array 1.0 R NCBIv36 Annotation Bundle
- Human Promotor Tiling Array NCBIv36 BPMAP file
- Human Tiling 1.0R Array Set (zip, 1 GB)
- Human Tiling 2.0R Array Set (zip, 1 GB)
- Maize Genome Array (zip, 12 MB)
- Medicago Genome Array (zip, 31 MB)
- Mouse Exon 1.0 ST Array Analysis (zip, 114 MB)
- Mouse Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive mm8 (zip, 14 MB)
- Mouse Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive mm9 (zip, 14 MB)
- Mouse Exon 1.0 St Array, GCOS (zip, 2.7 MB)
- Mouse Expression Set 430 (zip, 24 MB)
- Mouse Gene 1.0 ST Array, Analysis (zip, 20 MB)
- Mouse Gene 1.0 ST Array, GCOS (2.3 MB)
- Mouse Gene 1.1 ST Array Plate and Strip, Analysis (zip, 18 MB)
- Mouse Genome 430 2.0 Array (zip, 25 MB)
- Mouse Genome 430A 2.0 Array (zip, 13 MB)
- Mouse Genome Tiling 1.0 Array Set NCBIv36 BPMAP files
- Mouse Genome Tiling 2.0 Array Set NCBIv36 BPMAP files
- Mouse Promoter 1.0R Array (zip, 131 MB)
- Mouse Promoter Tiling Array NCBIv36 Annotation Bundle
- Mouse Promotor Tiling Array NCBIv36 BPMAP file
- Mouse Tiling 1.1R Array Set (zip, 1.56 GB)
- Mouse Tiling 2.0R Array Set (zip, 1 GB)
- P. aeruginosa Genome Array (zip, 5.8 MB)
- Poplar Genome Array (zip, 30 MB)
- Porcine Genome Array (zip, 13 MB)
- PrimeView™ Human Gene Expression Array (pdf, 15.2 MB)
- Rat Exon 1.0 ST Array Analysis (zip, 102 MB)
- Rat Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive rn3 (zip, 8.8 MB)
- Rat Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive rn4 (zip, 8.1 MB)
- Rat Exon 1.0 ST Array, GCOS (zip, 3.3 MB)
- Rat Expression Set 230 (zip, 16 MB)
- Rat Gene 1.0 ST Array, Analysis (zip, 19 MB)
- Rat Gene 1.0 ST Array, GCOS (2.4 MB)
- Rat Gene 1.1 ST Array Plate and Strip, Analysis (zip, 16.7 MB)
- Rat Genome 230 2.0 Array (zip, 17 MB)
- Rat ToxFX 1.0 Array (zip, 3.26 MB)
- Rhesus Macaque Genome Array (zip, 30 MB)
- Rice Genome Array (zip, 29 MB)
- S. cerevisiae Tiling 1.0R Array (zip, 83 MB)
- S. pombe Tiling 1.0FR Array (zip, 24MB)
- Soybean Genome Array (zip, 31 MB)
- Sugar Cane Genome Array (zip, 6 MB)
- Test3 Array (zip, 2.3 MB)
- Tomato Genome Array (zip, 6.6 MB)
- ToxFX Gene List (zip, 170KB)
- Unsupported Human Exon 1.0 ST Array CDF Files (zip, 205 MB)
- Unsupported Human Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Mouse Exon 1.0 ST Array CDF File (zip, 98 MB)
- Unsupported Mouse Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Rat Exon 1.0 ST Array CDF File (zip, 89 MB)
- Unsupported Rat Gene 1.0 ST Array CDF Files (zip, 12 MB)
- Vitis vinifera (Grape) Array (zip, 12 MB)
- Wheat Genome Array (zip, 28 MB)
- Xenopus laevis Genome 2.0 Array (zip, 22 MB)
- Xenopus laevis Genome Array (zip, 12 MB)
- Xenopus tropicalis Genome Array (zip, 31 MB)
- Yeast Genome 2.0 Array (zip, 7.4 MB)
- Yeast Genome S98 Array (zip, 6.61 MB)
- Zebra Finch Gene 1.1 ST Array Strip (zip, 14 MB)
- Zebrafish Genome Array (zip, 12 MB)
Made to Order Array Program
- S. aureus Genome Array (zip, 6.9 MB)
- Barley Genome Array (zip, 12 MB)
- Human X3P Array (zip, 30 MB)
- Rat Genome U34 Set (zip, 15 MB)
- Rat Toxicology U34 Array (zip, 2.77 MB)
If you do not see the library file that you require in the above list, please contact Affymetrix Technical Support.
