Instructions
WinZip is required for accessing the files. Download and install a free evaluation version of WinZip, then download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip and begin the installation.
For large files, you may wish to use a free download manager. Simply download the program and double click on the Affymetrix file you wish to access. The manager will allow you to speed up, schedule, and pause/resume any downloads from the site.
GeneAtlas™ Array Strips
The following array strip library files are for use with the GeneAtlas system and GeneAtlas Instrument Control Software. If you have an internet connection from the GeneAtlas instrument control computer workstation you can automatically download and install these files by following the instructions for installing library files in the GeneAtlas User's Guide. If you do not have access to the internet from the instrument control workstation download the library file *.zip file of interest, copy it to the instrument control workstation and extract the contents of the *.zip file to C:\Command_Console\Library.
WT Whole Transcript Gene Expression Array Strips
- Human Gene 1.1 ST Array Plate and Strip, Analysis (zip, 17 MB)
- Mouse Gene 1.1 ST Array Plate and Strip, Analysis (zip, 18 MB)
- Rat Gene 1.1 ST Array Plate and Strip, Analysis (zip, 16.7 MB)
Array Plate Library files
GeneTitan™ and GeneTitan MC Instrument and AGCC 3.x Software
The following array plate library files are intended for use with AGCC 3.x and higher for use with the GeneTitan family of instruments. Please note that the library files in this section cannot be used with AGCC 2.x. To find out which version of AGCC version is installed on your system, visit the AGCC Portal web page and observe the version number in the Help > About page.
Download the zip file and save the file to a folder on the workstation. Start the GeneTitan library file installer from the AGCC launcher window and set the source path in the application to the folder containing the array plate zip files. Start the install. Please note that the data files in the zip should not be extracted or uncompressed. The zip file must be saved as is with the .zip extension. Please refer to the AGCC user manual for additional information.
- AGCC 3.x HT HG-U133A Library Files (zip, 12MB)
- AGCC 3.x HT HG-U133B Library Files (zip, 12MB)
- AGCC 3.x HT HG-U133PM Plus and HG-U133 Array Strip Library Files (zip, 13.9 MB)
- AGCC 3.x HT MG-430A Library Files (zip, 12MB)
- AGCC 3.x HT MG-430B Library Files (zip, 11MB)
- AGCC 3.x HT Rat-Focus Library Files (zip, 11.9 MB)
- AGCC 3.x HuGene-1_1-ST-V1 Library Files (zip, 194 KB)
- AGCC 3.x MoGene-1_1-ST-V1 Library Files (zip, 338 KB)
- AGCC 3.x RaGene-1_1-ST-V1 Library Files (zip, 448 KB)
HTAPS Scanner and GCOS Software
The following array plate library files are intended for use with GeneChip Operating Software (GCOS). WinZip is required for accessing the files. Download and install a free evaluation version of WinZip, then download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip and begin the installation.
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT RG-230 PM Array Plate (zip, 61 MB)
- HT Rat-Focus Array (zip, 14 MB)
GeneChip® Array Cartridges
WinZip is required for accessing the files. Download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip, extract the files, and begin the installation.
DNA Analysis Arrays
Catalog Arrays
- AGCC 3.x Axiom_Exome319 GeneTitan MC library files
- Axiom® Exome319 Analysis Files
- AGCC 3.x Axiom ASI Array Plate GeneTitan MC library files, r3
- AGCC 3.x Axiom CEU 1 Array Plate GeneTitan MC library files, r3
- AGCC 3.x Axiom CHB 1 Array Plate GeneTitan MC library files, r3
- AGCC 3.x Axiom Exome GeneTitan MC library files
- AGCC 3.x Axiom Genome Wide AFR GeneTitan MC library files
- AGCC 3.x Axiom Genome Wide CHB2 GeneTitan MC library files
- AGCC 3.x Axiom Genome Wide Chicken GeneTitan MC library files
- AGCC 3.x Axiom Genome Wide EAS GeneTitan MC library files
- AGCC 3.x Axiom Genome Wide EUR GeneTitan MC library files
- AGCC 3.x Axiom Genome Wide LAT GeneTitan MC library files
- AGCC 3.x Axiom PanAFR Array Set, A GeneTitan MC library files, r3
- AGCC 3.x Axiom PanAFR Array Set, B GeneTitan MC library files, r3
- AGCC 3.x Axiom PanAFR Array Set, C GeneTitan MC library files, r3
- AGCC 3.x Axiom® BioBank GeneTitan MC library files
- AGCC 3.x Axiom® Genome-Wide BOS 1 Array Plate, GeneTitan MC library files, r3
- AGCC 3.x Axiom® miRNA Target Site GeneTitan MC library files
- AGCC 3.x Axiom_GW_HuOrigin GeneTitan MC library files, r2
- AGCC 3.x CytoScan® 750K GeneTitan MC library files
- Axiom™ HuOrigin, Analysis Files
- Axiom™ HuOrigin, Annotation Converter
- Axiom® Genome Wide CHB2, Annotation Converter
- Axiom® BioBank Analysis Files, r2
- Axiom® BioBank, Annotation Converter
- Axiom® Buffalo Analysis Files
- Axiom® Buffalo Annotation Converter
- Axiom® Exome, Analysis Files
- Axiom® Genome Wide AFR Analysis Files
- Axiom® Genome Wide AFR Annotation Converter
- Axiom® Genome Wide CHB 1 Array Plate, Analysis Files, Axiom® 2.0
- Axiom® Genome Wide CHB 1 Array Plate, Annotation Converter
- Axiom® Genome Wide CHB2 Analysis Files
- Axiom® Genome Wide Chicken Analysis Files
- Axiom® Genome Wide Chicken Annotation Converter
- Axiom® Genome Wide EAS Analysis Files
- Axiom® Genome Wide EAS Annotation Converter
- Axiom® Genome Wide EUR Analysis Files
- Axiom® Genome Wide EUR Annotation Converter
- Axiom® Genome Wide LAT Analysis Files
- Axiom® Genome Wide LAT Annotation Converter
- Axiom® Genome-Wide CEU 1 Array Plate, Analysis Files, r6
- Axiom® Genome-Wide CEU 1 Array Plate, Annotation Converter, r6
- Axiom® miRNA Target Site Analysis Files
- Axiom® miRNA Target Site Annotation Converter
- Axiom_Exome319, Annotation Converter
- Axiom® Exome, Annotation Converter
- ChAS Analysis Files for the CytoScan® 750K Array version NA32.3
- ChAS Analysis Files for the CytoScan® HD Array version NA32.3 (zip, 1.05 GB)
- ChAS Analysis Files for the Cytogenetics Array (zip, 632 MB)
- DMET™ Plus Library Files (zip, 7.62 MB)
- DMET™ Template for AGCC (zip, 145KB 3/10)
- DogSty06m520431 127,132 SNP v2 full set (127,000 SNPs) (zip, 15.7 MB)
- DogSty06m520431P 49,663 SNP v2 platinum set (50,000 high quality SNPs) (zip, 6.24 MB)
- Gene Titan MC Library Files
- Genome-Wide Human SNP Array 5.0 (zip, 90 MB)
- Genome-Wide Human SNP Array 5.0, Alternative CDF Files (zip, 70 MB)
- Genome-Wide Human SNP Array 6.0 (zip, 246 MB)
- Mapping 10K 2.0 Array (zip, 9.1 MB)
- Mapping 250K Nsp Array (zip, 43 MB)
- Mapping 250K Sty Array (zip, 42 MB)
- Mapping 50K Hind 240 Array (zip, 16 MB)
- Mapping 50K Xba 240 Array (zip, 17 MB)
- Mouse Diversity Array, AGCC Library Files (zip, 80.1 MB)
- Mouse Diversity Array, Analysis Files (zip, 112 MB)
- Mouse Diversity Array, Annotation Converter (zip, 4 KB)
- Rice 44K SNP Analysis Files
- Tag 3 Array (zip, 3.3 MB)
- Universal 10K Tag Array (zip, 1.8 MB)
- Universal 25K Tag Array (zip, 1.85 MB)
- Universal 3K Tag Array (zip 1.8 MB)
- Universal 5K Tag Array (zip 1.8 MB)
- Universal 70K Tag Array (zip, 2.16 MB)
Made to Order Array Program
Gene Expression Analysis Arrays
Catalog Arrays
- Arabidopsis ATH1 Genome Array (zip, 13 MB)
- Arabidopsis Gene 1.0 ST Array
- Arabidopsis Tiling 1.0R Array (zip, 120 MB)
- Bovine Gene 1.0 ST Array
- Bovine Genome Array (zip, 13MB)
- C elegans Genome Tiling Array ce4 BPMAP files
- C. elegans Gene 1.0 ST Array
- C. elegans Gene 1.1 ST Array
- C. elegans Genome Array (zip, 12 MB)
- C. elegans Tiling 1.0R Array (zip, 122 MB)
- CHO Gene 2.0 ST Array, Analysis
- CHO Gene 2.1 ST Array
- CHOGene 2.0 AGCC Library File Installer
- Canine 2.0 Genome Array (zip, 22 MB)
- Canine Gene 1.0 ST Array
- Chicken Gene 1.0 ST Array
- Chicken Genome Array Array (zip, 20 MB)
- Chromosome 21/22 1.0 Array Set (zip, 55 MB)
- Chromosome 21/22 2.0R Array (zip 87 MB)
- Citrus Genome Array (zip, 20 MB)
- Cotton Genome Array (zip, 14 MB)
- Cynomolgus Gene 1.0 ST Array
- Cynomolgus Gene 1.1 ST Array
- Cynomolgus-Rhesus Gene 1.1 ST Array
- Drosophila Gene 1.0 ST Array
- Drosophila Gene 1.1 ST Array
- Drosophila Genome 2.0 Array (zip, 13 MB)
- Drosophila Genome Array (zip, 10 MB)
- Drosophila Tiling 1.0R Array (zip, 124 MB)
- Drosophila Tiling 2.0R Array (zip, 114 MB)
- E. coli Antisense Genome Array (zip, 7.8 MB)
- E.coli Genome 2.0 Array (zip, 7.5 MB)
- ENCODE 2.0R Array (zip, 84 MB)
- Equine Gene 1.0 ST Array
- Feline Gene 1.0 ST Array
- GeneChip Tiling Arrays - Data Analysis Library File Updates
- GeneChip® Human Transcriptome Array 2.0 Analysis
- GeneChip® Human Transcriptome Array 2.0 AGCC Library File Installer
- Guinea Pig Gene 1.0 ST Array
- Guinea Pig Gene 1.1 ST Array
- HG-U219 Expression Console ™ Software Report Controls File
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT MG-430 PM Array Plate and Array Strip Library File (zip, 12 MB)
- HT RG-230 PM Array Plate (zip, 61 MB)
- HT Rat-Focus Array (zip, 14 MB)
- HT_HG-U133_Plus_PM Expression Console ™ Software Report Controls File Note: This file corrects an error associated with tracking
- HT_MG-430_PM Expression Console ™ Software Report Controls File
- HT_Rat230_PM Expression Console ™ Software Report Controls File
- Human Exon 1.0 ST Array Analysis (zip, 131 MB)
- Human Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive hg18 (zip, 13 MB)
- Human Exon 1.0 ST Array, GCOS (zip, 2.2 MB)
- Human Gene 1.0 ST Array, Analysis (zip, 18 MB)
- Human Gene 1.0 ST Array, GCOS (2.18 MB)
- Human Gene 1.1 ST Array Plate and Strip, Analysis (zip, 17 MB)
- Human Gene 2.0 AGCC Library File Installer
- Human Gene 2.0 ST Array, Analysis
- Human Gene 2.1 ST Array
- Human Genome 2.0 Tiling Array Set NCBIv36 BPMAP files
- Human Genome 2.0 Tiling Array Set NCBIv36 BPMAP files
- Human Genome Focus Array (zip, 6.7 MB)
- Human Genome U133 Plus 2.0 Array (zip, 30 MB)
- Human Genome U133 Set (zip, 25 MB)
- Human Genome U133A 2.0 Array (zip, 13 MB)
- Human Genome U219 AGCC Library File Installer
- Human Promoter 1.0R Array (zip, 132 MB)
- Human Promoter Array 1.0 R NCBIv36 Annotation Bundle
- Human Promotor Tiling Array NCBIv36 BPMAP file
- Human Tiling 1.0R Array Set (zip, 1 GB)
- Human Tiling 2.0R Array Set (zip, 1 GB)
- Installing GeneChip miRNA 3.0 Array Library Files for AGCC
- Maize Genome Array (zip, 12 MB)
- Marmoset Gene 1.0 ST Array
- Marmoset Gene 1.1 ST Array
- Medicago Gene 1.0 ST Array
- Medicago Gene 1.1 ST Array
- Medicago Genome Array (zip, 31 MB)
- MiRNA 2.0 AGCC Library File Installer
- MiRNA 2.0 Analysis Files for Expression Console
- MiRNA 3.0 AGCC Library File Installer
- MiRNA 3.0 Analysis Files for Expression Console
- MiRNA 3.1 Analysis Files for Expression Console
- Mouse Exon 1.0 ST Array Analysis (zip, 114 MB)
- Mouse Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive mm8 (zip, 14 MB)
- Mouse Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive mm9 (zip, 14 MB)
- Mouse Exon 1.0 St Array, GCOS (zip, 2.7 MB)
- Mouse Expression Set 430 (zip, 24 MB)
- Mouse Gene 1.0 ST Array, Analysis (zip, 20 MB)
- Mouse Gene 1.0 ST Array, GCOS (2.3 MB)
- Mouse Gene 1.1 ST Array Plate and Strip, Analysis (zip, 18 MB)
- Mouse Gene 2.0 AGCC Library File Installer
- Mouse Gene 2.0 ST Array, Analysis
- Mouse Gene 2.1 ST Array
- Mouse Genome 430 2.0 Array (zip, 25 MB)
- Mouse Genome 430A 2.0 Array (zip, 13 MB)
- Mouse Genome Tiling 1.0 Array Set NCBIv36 BPMAP files
- Mouse Genome Tiling 2.0 Array Set NCBIv36 BPMAP files
- Mouse Promoter 1.0R Array (zip, 131 MB)
- Mouse Promoter Tiling Array NCBIv36 Annotation Bundle
- Mouse Promotor Tiling Array NCBIv36 BPMAP file
- Mouse Tiling 1.1R Array Set (zip, 1.56 GB)
- Mouse Tiling 2.0R Array Set (zip, 1 GB)
- Ovine Gene 1.0 ST Array
- P. aeruginosa Genome Array (zip, 5.8 MB)
- Poplar Genome Array (zip, 30 MB)
- Porcine Gene 1.0 ST Array
- Porcine Genome Array (zip, 13 MB)
- PrimeView™ Human Gene Expression Array (pdf, 15.2 MB)
- Rabbit Gene 1.0 ST
- Rabbit Gene 1.1 ST
- Rat Exon 1.0 ST Array Analysis (zip, 102 MB)
- Rat Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive rn3 (zip, 8.8 MB)
- Rat Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive rn4 (zip, 8.1 MB)
- Rat Exon 1.0 ST Array, GCOS (zip, 3.3 MB)
- Rat Expression Set 230 (zip, 16 MB)
- Rat Gene 1.0 ST Array, Analysis (zip, 19 MB)
- Rat Gene 1.0 ST Array, GCOS (2.4 MB)
- Rat Gene 1.1 ST Array Plate and Strip, Analysis (zip, 16.7 MB)
- Rat Gene 2.0 AGCC Library File Installer
- Rat Gene 2.0 ST Array, Analysis
- Rat Gene 2.1 ST Array
- Rat Genome 230 2.0 Array (zip, 17 MB)
- Rat ToxFX 1.0 Array (zip, 3.26 MB)
- Rhesus Gene 1.0 ST Array
- Rhesus Macaque Genome Array (zip, 30 MB)
- Rice Genome Array (zip, 29 MB)
- Rice, Chinese build Gene 1.0 ST Array
- Rice, Chinese build Gene 1.1 ST Array
- Rice, Japanese build Gene 1.0 ST Array
- Rice, Japanese build Gene 1.1 ST Array
- Rice, US build Gene 1.0 ST Array
- Rice, US build Gene 1.1 ST Array
- S. cerevisiae Tiling 1.0R Array (zip, 83 MB)
- S. pombe Tiling 1.0FR Array (zip, 24MB)
- Soybean Gene 1.0 ST Array
- Soybean Gene 1.1 ST Array
- Soybean Genome Array (zip, 31 MB)
- Sugar Cane Genome Array (zip, 6 MB)
- Test3 Array (zip, 2.3 MB)
- Tomato Genome Array (zip, 6.6 MB)
- ToxFX Gene List (zip, 170KB)
- Unsupported Human Exon 1.0 ST Array CDF Files (zip, 205 MB)
- Unsupported Human Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Mouse Exon 1.0 ST Array CDF File (zip, 98 MB)
- Unsupported Mouse Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Rat Exon 1.0 ST Array CDF File (zip, 89 MB)
- Unsupported Rat Gene 1.0 ST Array CDF Files (zip, 12 MB)
- Vitis vinifera (Grape) Array (zip, 12 MB)
- Wheat Genome Array (zip, 28 MB)
- Xcel AGCC Library File Installer
- Xenopus laevis Genome 2.0 Array (zip, 22 MB)
- Xenopus laevis Genome Array (zip, 12 MB)
- Xenopus tropicalis Genome Array (zip, 31 MB)
- Yeast Genome 2.0 Array (zip, 7.4 MB)
- Yeast Genome S98 Array (zip, 6.61 MB)
- Zebra Finch Gene 1.0 ST Array
- Zebra Finch Gene 1.1 ST Array
- Zebrafish Gene 1.0 ST Array
- Zebrafish Genome Array (zip, 12 MB)
Made to Order Array Program
- S. aureus Genome Array (zip, 6.9 MB)
- Barley Genome Array (zip, 12 MB)
- Human X3P Array (zip, 30 MB)
- Rat Genome U34 Set (zip, 15 MB)
- Rat Toxicology U34 Array (zip, 2.77 MB)
If you do not see the library file that you require in the above list, please contact Affymetrix Technical Support.
