Library Files
These library files are intended for GeneChip® Operating Software (GCOS), Microarray Suite (MAS), and Expression Console™ Software users. Additional annotation files can be accessed on specific array support pages.
Instructions
WinZip is required for accessing the files. Download and install a free evaluation version of WinZip, then download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip and begin the installation.
For large files, you may wish to use a free download manager. Simply download the program and double click on the Affymetrix file you wish to access. The manager will allow you to speed up, schedule, and pause/resume any downloads from the site.
Array Plate Library files
GeneTitan™ and GeneTitan MC Instrument and AGCC 3.x Software
The following array plate library files are intended for use with AGCC 3.x and higher for use with the GeneTitan family of instruments. Please note that the library files in this section cannot be used with AGCC 2.x. To find out which version of AGCC version is installed on your system, visit the AGCC Portal web page and observe the version number in the Help > About page.
Download the zip file and save the file to a folder on the workstation. Start the GeneTitan library file installer from the AGCC launcher window and set the source path in the application to the folder containing the array plate zip files. Start the install. Please note that the data files in the zip should not be extracted or uncompressed. The zip file must be saved as is with the .zip extension. Please refer to the AGCC user manual for additional information.
- AGCC 3.X HuGene-1_1-ST-V1 Library Files (zip, 194 KB)
- AGCC 3.X MoGene-1_1-ST-V1 Library Files (zip, 338 KB)
- AGCC 3.X RaGene-1_1-ST-V1 Library Files (zip, 448 KB)
- AGCC 3.x Axiom ASI Array Plate GeneTitan MC Library Files (zip, 14 KB)
- AGCC 3.x Axiom GeneTitan MC Library files (zip, 14 KB)
- AGCC 3.x HG-U219 Library Files (zip, 13 MB)
- AGCC 3.x HT HG-U133A Library Files (zip, 12MB)
- AGCC 3.x HT HG-U133B Library Files (zip, 12MB)
- AGCC 3.x HT HG-U133PM Plus Library Files (zip, 13.9 MB)
- AGCC 3.x HT MG-430A Library Files (zip, 12MB)
- AGCC 3.x HT MG-430B Library Files (zip, 11MB)
- AGCC 3.x HT MG-430PM Library Files (zip, 12 MB)
- AGCC 3.x HT Rat230PM Library Files (zip, 8.20 MB)
GeneTitan Instrument and AGCC 2.x Software
The following array plate library files are intended for use with AGCC 2.x for use with the GeneTitan Instrument. These library files cannot be used with the GeneTitan MC Instrument and AGCC 3.x software.
Download the zip file and save the file to a folder on the workstation. Start the GeneTitan library file installer from the AGCC launcher window and set the Source Path in the application to the folder containing the array plate zip files. Start the install. Please note: the data files in the zip should not be extracted or uncompressed. The zip file must be saved as is with the .zip extension. Please refer to the AGCC user manual for additional information.
- AGCC 2.x HG-U219 Library Files (zip, 13 MB)
- AGCC 2.x HT HG-U133A Library Files (zip, 11.7 MB)
- AGCC 2.x HT HG-U133B Library Files (zip, 11.2 MB)
- AGCC 2.x HT HG-U133PM Plus Library Files (zip, 13.9 MB)
- AGCC 2.x HT MG-430A Library Files (zip, 11.6 MB)
- AGCC 2.x HT MG-430B Library Files (zip, 11.2 MB)
- AGCC 2.x HT MG-430PM Library Files (zip, 12 MB)
- AGCC 2.x HT Rat-Focus Library Files (zip, 12 MB)
- AGCC 2.x HT Rat230PM Library Files (zip, 8.20 MB)
HTAPS Scanner and GCOS Software
The following array plate library files are intended for use with GeneChip Operating Software (GCOS). WinZip is required for accessing the files. Download and install a free evaluation version of WinZip, then download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip and begin the installation.
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT Mouse Genome 430 (zip, 25 MB)
- HT Rat-Focus Array (zip, 14 MB)
GeneChip Array Cartridge Library Files
WinZip is required for accessing the files. Download and install a free evaluation version of WinZip, then download the zipped files to your hard drive using the links below. Double click on the downloaded file to open WinZip and begin the installation. For large files, you may wish to use a free download manager. Simply download the program and double click on the Affymetrix file you wish to access. The manager will allow you to speed up, schedule, and pause/resume any downloads from the site.
DNA Analysis Arrays
Catalog Arrays
- Alternative CDF Files, Genome-Wide Human SNP Array 5.0 (zip, 70 MB)
- Axiom™ Genome-Wide ASI 1 Array Plate (zip, 84 MB)
- Axiom™ Genotyping Solution, Analysis Files (zip 86MB)
- DMET™ Plus Genotyping Library Files (zip, 43MB)
- DMET™ Plus Library Files (zip, 7.62 MB)
- DMET™ Template for AGCC (zip, 145KB 3/10)
- Genome-Wide Human SNP Array 5.0 (zip, 90 MB)
- Genome-Wide Human SNP Array 6.0 (zip, 246 MB)
- Mapping 10K 2.0 Array (zip, 9.1 MB)
- Mapping 250K Nsp Array (zip, 43 MB)
- Mapping 250K Sty Array (zip, 42 MB)
- Mapping 50K Hind 240 Array (zip, 16 MB)
- Mapping 50K Xba 240 Array (zip, 17 MB)
- Tag 3 Array (zip, 3.3 MB)
- Universal 10K Tag Array (zip, 1.8 MB)
- Universal 25K Tag Array (zip, 1.85 MB)
- Universal 3K Tag Array (zip 1.8 MB)
- Universal 5K Tag Array (zip 1.8 MB)
- Universal 70K Tag Array (zip, 2.16 MB)
Made to Order Array Program
Gene Expression Analysis Arrays
Catalog Arrays
- Arabidopsis ATH1 Genome Array (zip, 13 MB)
- C. elegans Genome Array (zip, 12 MB)
- Drosophila Genome 2.0 Array (zip, 13 MB)
- Drosophila Genome Array (zip, 10 MB)
- Drosophila Tiling 1.0R Array (zip, 124 MB)
- Drosophila Tiling 2.0R Array (zip, 114 MB)
- E. coli Antisense Genome Array (zip, 7.8 MB)
- E.coli Genome 2.0 Array (zip, 7.5 MB)
- P. aeruginosa Genome Array (zip, 5.8 MB)
- Plasmodium/Anopheles Genome Array (zip, 12 MB)
- Vitis vinifera (Grape) Array (zip, 12 MB)
- Xenopus laevis Genome 2.0 Array (zip, 22 MB)
- Xenopus laevis Genome Array (zip, 12 MB)
- Xenopus tropicalis Genome Array (zip, 31 MB)
- Arabidopsis Tiling 1.0R Array (zip, 120 MB)
- Bovine Genome Array (zip, 13MB)
- C elegans Genome Tiling Array ce4 BPMAP files
- C. elegans Tiling 1.0R Array (zip, 122 MB)
- Canine 2.0 Genome Array (zip, 22 MB)
- Canine Genome Array (zip, 13 MB)
- Chicken Genome Array Array (zip, 20 MB)
- Chromosome 21/22 1.0 Array Set (zip, 55 MB)
- Chromosome 21/22 2.0R Array (zip 87 MB)
- Citrus Genome Array (zip, 20 MB)
- Cotton Genome Array (zip, 14 MB)
- ENCODE 2.0R Array (zip, 84 MB)
- Expression Console ™ Software Report Controls File
- Expression Console ™ Software Report Controls File
- Expression Console ⢠Software Report Controls File
- Expression Console ⢠Software Report Controls File Note: This file corrects an error associated with tracking
- GeneChip Tiling Arrays - Data Analysis Library File Updates
- HT Human Genome U133A (zip, 13 MB)
- HT Human Genome U133B (zip, 13 MB)
- HT Mouse Genome 430 (zip, 25 MB)
- HT Rat-Focus Array (zip, 14 MB)
- Human Exon 1.0 ST Array Analysis (zip, 131 MB)
- Human Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive hg18 (zip, 13 MB)
- Human Exon 1.0 ST Array, GCOS (zip, 2.2 MB)
- Human Gene 1.0 ST Array, Analysis (zip, 18 MB)
- Human Gene 1.0 ST Array, GCOS (2.18 MB)
- Human Genome 2.0 Tiling Array Set NCBIv36 BPMAP files
- Human Genome 2.0 Tiling Array Set NCBIv36 BPMAP files
- Human Genome Focus Array (zip, 6.7 MB)
- Human Genome U133 Plus 2.0 Array (zip, 30 MB)
- Human Genome U133 Set (zip, 25 MB)
- Human Genome U133A 2.0 Array (zip, 13 MB)
- Human Promoter 1.0R Array (zip, 132 MB)
- Human Promoter Array 1.0 R NCBIv36 Annotation Bundle
- Human Promotor Tiling Array NCBIv36 BPMAP file
- Human Tiling 1.0R Array Set (zip, 1 GB)
- Human Tiling 2.0R Array Set (zip, 1 GB)
- Maize Genome Array (zip, 12 MB)
- Medicago Genome Array (zip, 31 MB)
- MiRNA Array (zip, 4.69 MB)
- MiRNA-1_0_2Xgain (to be used with FlashTag HSR)
- Mouse Exon 1.0 ST Array Analysis (zip, 114 MB)
- Mouse Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive mm8 (zip, 14 MB)
- Mouse Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive mm9 (zip, 14 MB)
- Mouse Exon 1.0 St Array, GCOS (zip, 2.7 MB)
- Mouse Expression Set 430 (zip, 24 MB)
- Mouse Gene 1.0 ST Array, Analysis (zip, 20 MB)
- Mouse Gene 1.0 ST Array, GCOS (2.3 MB)
- Mouse Genome 430 2.0 Array (zip, 25 MB)
- Mouse Genome 430A 2.0 Array (zip, 13 MB)
- Mouse Genome Tiling 1.0 Array Set NCBIv36 BPMAP files
- Mouse Genome Tiling 2.0 Array Set NCBIv36 BPMAP files
- Mouse Promoter 1.0R Array (zip, 131 MB)
- Mouse Promoter Tiling Array NCBIv36 Annotation Bundle
- Mouse Promotor Tiling Array NCBIv36 BPMAP file
- Mouse Tiling 1.1R Array Set (zip, 1.56 GB)
- Mouse Tiling 2.0R Array Set (zip, 1 GB)
- Poplar Genome Array (zip, 30 MB)
- Porcine Genome Array (zip, 13 MB)
- Rat Exon 1.0 ST Array Analysis (zip, 102 MB)
- Rat Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive rn3 (zip, 8.8 MB)
- Rat Exon 1.0 ST Array Probeset, and Meta Probeset Files, core, full, extended and comprehensive rn4 (zip, 8.1 MB)
- Rat Exon 1.0 ST Array, GCOS (zip, 3.3 MB)
- Rat Expression Set 230 (zip, 16 MB)
- Rat Gene 1.0 ST Array, Analysis (zip, 19 MB)
- Rat Gene 1.0 ST Array, GCOS (2.4 MB)
- Rat Genome 230 2.0 Array (zip, 17 MB)
- Rat ToxFX 1.0 Array (zip, 3.26 MB)
- Rhesus Macaque Genome Array (zip, 30 MB)
- Rice Genome Array (zip, 29 MB)
- S. cerevisiae Tiling 1.0R Array (zip, 83 MB)
- S. pombe Tiling 1.0FR Array (zip, 24MB)
- Soybean Genome Array (zip, 31 MB)
- Sugar Cane Genome Array (zip, 6 MB)
- Test3 Array (zip, 2.3 MB)
- Tomato Genome Array (zip, 6.6 MB)
- ToxFX Gene List (zip, 170KB)
- Unsupported Human Exon 1.0 ST Array CDF Files (zip, 205 MB)
- Unsupported Human Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Mouse Exon 1.0 ST Array CDF File (zip, 98 MB)
- Unsupported Mouse Gene 1.0 ST Array CDF Files (zip, 13 MB)
- Unsupported Rat Exon 1.0 ST Array CDF File (zip, 89 MB)
- Unsupported Rat Gene 1.0 ST Array CDF Files (zip, 12 MB)
- Wheat Genome Array (zip, 28 MB)
- Yeast Genome 2.0 Array (zip, 7.4 MB)
- Yeast Genome S98 Array (zip, 6.61 MB)
- Zebrafish Genome Array (zip, 12 MB)
Made to Order Array Program
- B. subtilis Genome Array (zip, 5.20 MB)
- S. aureus Genome Array (zip, 6.9 MB)
- Barley Genome Array (zip, 12 MB)
- Human X3P Array (zip, 30 MB)
- Rat Genome U34 Set (zip, 15 MB)
- Rat Toxicology U34 Array (zip, 2.77 MB)
If you do not see the library file that you require in the above list, please contact Affymetrix Technical Support.
Library File Updaters
GeneChip® Scanner 3000 Library File Updater
To run the GeneChip Rat Expression 230 Arrays, GeneChip Mouse Expression 430 Arrays, or CustomExpress™ Arrays (Formats: 100-2187, 49-5241, 49-7875) on the GeneChip Scanner 3000, you will need to install the library files as usual and then perform a short update to those library files. To learn more, follow the link below.
GeneChip Scanner 3000 Library File Updater
MAS to GCOS Library File Updater (zip, 1.7 MB)
GCOS v1.4 Server with Oracle 10g
To perform a fresh install CustomExpress™ Arrays expression array library files on a GCOS v1.4 Server based on Oracle 10g, you will need to perform a short update to those library file installers and then install the library files as usual. To learn more, follow the link below.
GCOS v1.4 Server with Oracle 10g Library File Updater
