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Mouse Gene 1.0 ST Array - Support Materials
For more information, please see the product page.
Array Comparisons
Comparison Spreadsheets User's Guide (pdf, 82 KB)
Mouse 430 to Mouse Gene 1.0 ST, Best Match (zip, 485 KB)
Mouse 430 to Mouse Gene 1.0 ST, Complex Match (zip, 1.2 MB)
Mouse 430 to Mouse Gene 1.0 ST, Good Match (zip, 649 KB)
Mouse 430 to Mouse Gene 1.0 ST, No Match (zip, 36 KB)
Mouse Exon 1.0 ST to Mouse Gene 1.0 ST, Best Match (zip, 599 KB)
Mouse Exon 1.0 ST to Mouse Gene 1.0 ST, Complex Match (zip, 6.7 MB)
Mouse Exon 1.0 ST to Mouse Gene 1.0 ST, Good Match (zip, 820 KB)
Mouse Exon 1.0 ST to Mouse Gene 1.0 ST, No Match (zip, 3 KB)
Data Sheets
Gene 1.0 ST Array System for Human, Mouse and Rat (pdf, 3.07 MB)-Japanese Version
Gene 1.0 ST Array System for Human, Mouse and Rat (pdf, 436 KB)
Frequently Asked Questions
Library Files
Mouse Gene 1.0 ST Array, Analysis (zip, 20 MB)
Mouse Gene 1.0 ST Array, GCOS (2.3 MB)
Mouse Gene 2.0 AGCC Library File Installer (zip, 20 MB)
Mouse Gene 2.0 ST Array, Analysis (zip, 29 MB)
Unsupported Mouse Gene 1.0 ST Array CDF Files (zip, 13 MB)
Manuals
Ambion® WT Expression Kit (pdf, 1.14 MB)
Expression Wash, Stain and Scan User Manual for Cartridge Arrays (pdf, 5.41 MB)
WT Terminal Labeling and Hybridization for use with the Ambion® WT Expression Kit (pdf, 424 KB)
Publications
Publications and Reference for Affymetrix® GeneChip® Exon and Gene 1.0 ST Arrays (pdf, 289 KB)
Package Inserts
GeneChip® Gene ST Array (pdf, 323 KB)
Mouse Gene 1.0 ST Array (pdf, 156 KB)
Quick Reference Cards
QC Metrics for Exon and Gene Design Expression Arrays (pdf, 123 KB)
Sample Data
Mouse Gene 2.1 Sample Data (zip, 65 MB)
Technical Notes
Gene 1.0 ST Array Design (pdf, 324 KB)
White Papers
Quality Assessment of Exon and Gene 1.0 ST Arrays (pdf, 180 KB)
Whole Transcript (WT) Sense Target Labeling Assay Performance (pdf, 652 KB)
Additional Support
Alignment, Annotation, and Sequence files
Information about using Alignment, Annotation, and Sequence files
NetAffx Alignment Files
MoGene-2_0-st-v1 BED File (15 MB, 9/17/12)
MoGene-1_0-st-v1 BED File (14 MB, 1/9/09)
Current NetAffx Annotation Files
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 33.2 (8.1 MB, 3/27/13)
MoGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 33.2 (9.4 MB, 3/28/13)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (14 MB, 3/27/13)
MoGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (20 MB, 3/28/13)
Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.
Design Time Annotation Files
MoGene-2_0-st-v1 Design Time Annotations, Full, GFF Format (47 MB, 8/9/12)
MoGene-1_0-st-v1 Design Time Annotations, Full, GFF Format (25 MB, 3/12/08)
MoGene-2_0-st-v1 Design Time Annotations, Probeset, CSV Format (11 MB, 8/9/12)
Note: For gene level analysis you will need to download one of the probeset level annotation zip files (CSV) to get the meta-probeset lists. None of these files contain textual biological annotations such as gene name or GO annotations; textual biological information can be found in the NetAffx Transcript CSV file. The design time Probeset CSV file provides information about the probeset such as genome coordinate and supporting annotation types. This is a subset of information found in the NetAffx Probeset CSV file. The Probeset CSV file is also a subset of the Full GFF files which contain transcript cluster, exon cluster, probeset, and probe level annotations. The GFF files also contain information about the specific annotations supporting each of the probesets. For example, use the Full GFF files for pulling design time information into a local database. The Mappings TSV file contains mappings between other arrays and annotations.
Sequence Files
MoGene-2_0-st-v1 Probe Sequences, FASTA format (22 MB, 2/19/13)
MoGene-1_0-st-v1 Probe Sequences, FASTA format (26 MB, 3/19/08)
MoGene-2_0-st-v1 Probe Sequences, tabular format (18 MB, 2/19/13)
MoGene-1_0-st-v1 Probe Sequences, tabular format (21 MB, 3/19/08)
MoGene-2_0-st-v1 Transcript Cluster Sequences, FASTA format (25 MB, 10/31/12)
MoGene-1_0-st-v1 Transcript Cluster Sequences, FASTA format (19 MB, 3/19/08)
Archived NetAffx Annotation Files
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (7.5 MB, 2/12/09)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (7.5 MB, 2/18/09)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (7.4 MB, 1/16/09)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 28 (7.4 MB, 3/11/09)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 29 (7.7 MB, 7/6/09)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 30 (7.6 MB, 12/8/09)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 30 (7.6 MB, 11/9/09)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 31 (7.7 MB, 8/27/10)
MoGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 32 (7.8 MB, 10/7/11)
MoGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 33 (9.3 MB, 11/15/12)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 23 (11 MB, 9/17/07)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 24 (6.1 MB, 11/12/07)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 25 (7.2 MB, 3/20/08)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 26 (9.9 MB, 7/17/08)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 27 (9.8 MB, 11/24/08)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 28 (9.8 MB, 3/11/09)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 29 (11 MB, 7/6/09)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 30 (11 MB, 12/8/09)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 30 (11 MB, 11/9/09)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 31 (12 MB, 8/27/10)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 32 (13 MB, 6/23/11)
MoGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 33 (20 MB, 11/15/12)
MoGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 33.1 (18 MB, 12/10/12)
Archived Sequence Files
MoGene-1_0-st-v1 Probe Sequences, FASTA format (26 MB, 9/5/07)
MoGene-1_0-st-v1 Probe Sequences, tabular format (21 MB, 9/5/07)
MoGene-1_0-st-v1 Transcript Cluster Sequences, FASTA format (19 MB, 9/5/07)
Archived Library Files