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Human Gene 1.0 ST Array - Support Materials
For more information, please see the product page.
Application Notes
Whole-transcript Expression Analysis (pdf, 557 kb)
Array Comparisons
User's Guide to Product Comparison Spreadsheets (pdf, 82 KB)
Comparison Spreadsheets User's Guide (pdf, 82 KB)
HG-U133 Plus to Human Gene 1.0 ST, Best Match (zip, 651 KB)
HG-U133 Plus to Human Gene 1.0 ST, Complex Match (zip, 2.7 MB)
HG-U133 Plus to Human Gene 1.0 ST, Good Match (zip, 658 KB)
HG-U133 Plus to Human Gene 1.0 ST, No Match (zip, 38 KB)
Human Exon 1.0 ST to Human Gene 1.0 ST, Best Match (zip, 485 KB)
Human Exon 1.0 ST to Human Gene 1.0 ST, Complex Match (zip, 29 MB)
Human Exon 1.0 ST to Human Gene 1.0 ST, Good Match (zip, 521 KB)
Human Exon 1.0 ST to Human Gene 1.0 ST, No Match (zip 500 B)
Data Sheets
Gene 1.0 ST Array System for Human, Mouse and Rat (pdf, 3.07 MB)-Japanese Version
Gene 1.0 ST Array System for Human, Mouse and Rat (pdf, 436 KB)
Frequently Asked Questions
Library Files
Human Gene 1.0 ST Array, Analysis (zip, 18 MB)
Human Gene 1.0 ST Array, GCOS (2.18 MB)
Unsupported Human Gene 1.0 ST Array CDF Files (zip, 13 MB)
Manuals
Whole Transcript (WT) Sense Target Labeling Assay (pdf, 1.18 MB)
Package Inserts
Human Gene 1.0 ST Array (pdf, 160 KB)
Quick Reference Cards
QC Metrics for Exon and Gene Design Expression Arrays (pdf, 123 KB)
Sample Data
Technical Notes
Gene 1.0 ST Array Design (pdf, 324 KB)
White Papers
Human Gene 1.0 ST Array Performance (pdf, 620 KB)
Quality Assessment of Exon and Gene 1.0 ST Arrays (pdf, 180 KB)
Whole Transcript (WT) Sense Target Labeling Assay Performance (pdf, 652 KB)
Alignment, Annotation, and Sequence files
Information about using Alignment, Annotation, and Sequence files
NetAffx Alignment Files
HuGene-1_0-st-v1 BED File (14 MB, 1/9/09)
Design Time Annotation Files
HuGene-1_0-st-v1 Design Time Annotations, Full, GFF Format (23 MB, 3/23/07)
Note: For gene level analysis you will need to download one of the probeset level annotation zip files (CSV) to get the meta-probeset lists. None of these files contain textual biological annotations such as gene name or GO annotations; textual biological information can be found in the NetAffx Transcript CSV file. The design time Probeset CSV file provides information about the probeset such as genome coordinate and supporting annotation types. This is a subset of information found in the NetAffx Probeset CSV file. The Probeset CSV file is also a subset of the Full GFF files which contain transcript cluster, exon cluster, probeset, and probe level annotations. The GFF files also contain information about the specific annotations supporting each of the probesets. For example, use the Full GFF files for pulling design time information into a local database. The Mappings TSV file contains mappings between other arrays and annotations.
Current NetAffx Annotation Files
HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 30 (10 MB, 1/22/10)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 30 (17 MB, 11/9/09)
Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.
Sequence Files
HuGene-1_0-st-v1 Probe Sequences, FASTA format (25 MB, 2/23/10)
HuGene-1_0-st-v1 Probe Sequences, tabular format (21 MB, 2/23/10)
HuGene-1_0-st-v1 Sequence Files README (10 KB, 2/23/10)
HuGene-1_0-st-v1 Transcript Cluster Sequences, FASTA format (21 MB, 3/29/07)
Archived NetAffx Annotation Files
HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (8.3 MB, 2/12/09)
HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (8.3 MB, 2/18/09)
HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (8.3 MB, 1/16/09)
HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 28 (8.8 MB, 3/11/09)
HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 29 (9.6 MB, 7/6/09)
HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 30 (10 MB, 11/9/09)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 22 (11 MB, 6/11/07)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 23 (11 MB, 9/17/07)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 24 (8.3 MB, 11/12/07)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 25 (8.7 MB, 3/20/08)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 26 (11 MB, 7/17/08)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 27 (10 MB, 11/24/08)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 28 (12 MB, 3/11/09)
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 29 (14 MB, 7/6/09)
Archived Sequence Files
HuGene-1_0-st-v1 Probe Sequences, FASTA format (22 MB, 3/29/07)
HuGene-1_0-st-v1 Probe Sequences, FASTA format (25 MB, 7/13/07)
HuGene-1_0-st-v1 Probe Sequences, FASTA format (25 MB, 2/23/10)
HuGene-1_0-st-v1 Probe Sequences, tabular format (21 MB, 3/29/07)
HuGene-1_0-st-v1 Probe Sequences, tabular format (20 MB, 7/13/07)
HuGene-1_0-st-v1 Probe Sequences, tabular format (21 MB, 2/23/10)