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Human Gene ST Arrays - Support Materials

For more information, please see the product page.

Application Notes

Whole-transcript Expression Analysis (pdf, 557 kb)

Brochure

Expression Microarray Reagent Guide (pdf, 244 KB)

Array Comparisons

Comparison Spreadsheets User's Guide (pdf, 82 KB)

HG-U133 Plus to Human Gene 1.0 ST, Best Match (zip, 651 KB)

HG-U133 Plus to Human Gene 1.0 ST, Complex Match (zip, 2.7 MB)

HG-U133 Plus to Human Gene 1.0 ST, Good Match (zip, 658 KB)

HG-U133 Plus to Human Gene 1.0 ST, No Match (zip, 38 KB)

Human Exon 1.0 ST to Human Gene 1.0 ST, Best Match (zip, 485 KB)

Human Exon 1.0 ST to Human Gene 1.0 ST, Complex Match (zip, 29 MB)

Human Exon 1.0 ST to Human Gene 1.0 ST, Good Match (zip, 521 KB)

Human Exon 1.0 ST to Human Gene 1.0 ST, No Match (zip 500 B)

Data Sheets

Gene 1.0 ST Array System for Human, Mouse and Rat (pdf, 3.07 MB)-Japanese Version

Gene 1.0 ST Array System for Human, Mouse and Rat (pdf, 436 KB)

Human Gene 2.0 and 2.1 Arrays ST Arrays (pdf, 100 KB)

Human Gene 2.0 ST Array (pdf, 1.7MB) – Japanese version

Frequently Asked Questions

Gene ST Arrays (pdf, 116KB)

Library Files

GeneChip® Human Gene Array 1.0 TAC Configuration File (zip, 896 B)

GeneChip® Human Gene Array 2.0 TAC Configuration File (zip, 890 B)

Human Gene 1.0 ST Array, Analysis (zip, 18 MB)

Human Gene 1.0 ST Array, GCOS (2.18 MB)

Human Gene 2.0 AGCC Library File Installer (zip, 26 MB)

Human Gene 2.0 ST Array, Analysis (zip, 36 MB)

Unsupported Human Gene 1.0 ST Array CDF Files (zip, 13 MB)

Manuals

Expression Console™ Software (pdf, 6 MB)

Expression Wash, Stain and Scan User Manual for Cartridge Arrays (pdf, 2.52 MB)

GeneChip® High Throughput WT PLUS Kit (pdf, 10 MB)

Sample Attribute Editor (pdf, 597 KB)

SensationPlus™ FFPE Amplification and WT Labeling Kit (pdf, 391 KB)

Transcriptome Analysis Console (pdf, 7 MB)

WT Pico Kit User Guide (pdf, 1.8 MB)

WT PLUS Reagent Kit User Manual (pdf, 2 MB)

Publications

Publications and Reference for Affymetrix® GeneChip® Exon and Gene 1.0 ST Arrays (pdf, 289 KB)

Package Inserts

Gene 1.0 ST Array (pdf, 163 KB)

Gene 2.0 ST Array (pdf, 162 KB)

Quick Reference Cards

Expression Console Quick Reference Card (pdf, 1.13 MB)

Sample Data

Gene 1.0 ST Array Data Set

Human Gene 2.0 ST Array Data Set (zip, 532 MB)

Technical Notes

Gene 1.0 ST Array Design (pdf, 324 KB)

White Papers

Human Gene 1.0 ST Array Performance (pdf, 620 KB)

Quality Assessment of Exon and Gene 1.0 ST Arrays (pdf, 180 KB)

Whole Transcript (WT) Sense Target Labeling Assay Performance (pdf, 652 KB)

Additional Support

Fluidics Scripts

Probe Set Data in MAGE-ML Format

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

HuGene-2_0-st-v1 BED File (20 MB, 8/23/12)

HuGene-1_0-st-v1 BED File, GRCh37 (15 MB, 3/7/13)

HuGene-1_0-st-v1 BED File, NCBI 36.1 (14 MB, 1/9/09)

Current NetAffx Annotation Files

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 36 (23 MB, 7/6/16)

HuGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 36 (24 MB, 7/6/16)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 36 (79 MB, 7/6/16)

HuGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 36 (79 MB, 7/6/16)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Design Time Annotation Files

HuGene-2_0-st-v1 Design Time Annotations, Full, GFF Format (66 MB, 8/9/12)

HuGene-1_0-st-v1 Design Time Annotations, Full, GFF Format (23 MB, 3/23/07)

HuGene-2_0-st-v1 Design Time Annotations, Probeset, CSV Format (17 MB, 7/27/12)

Note: For gene level analysis you will need to download one of the probeset level annotation zip files (CSV) to get the meta-probeset lists. None of these files contain textual biological annotations such as gene name or GO annotations; textual biological information can be found in the NetAffx Transcript CSV file. The design time Probeset CSV file provides information about the probeset such as genome coordinate and supporting annotation types. This is a subset of information found in the NetAffx Probeset CSV file. The Probeset CSV file is also a subset of the Full GFF files which contain transcript cluster, exon cluster, probeset, and probe level annotations. The GFF files also contain information about the specific annotations supporting each of the probesets. For example, use the Full GFF files for pulling design time information into a local database. The Mappings TSV file contains mappings between other arrays and annotations.

Sequence Files

HuGene-2_0-st-v1 Probe Sequences, FASTA format (30 MB, 2/19/13)

HuGene-1_0-st-v1 Probe Sequences, FASTA format (25 MB, 2/23/10)

HuGene-2_0-st-v1 Probe Sequences, tabular format (25 MB, 2/19/13)

HuGene-1_0-st-v1 Probe Sequences, tabular format (20 MB, 8/14/15)

HuGene-2_0-st-v1 Transcript Cluster Sequences, FASTA format (36 MB, 8/1/12)

HuGene-1_0-st-v1 Transcript Cluster Sequences, FASTA format (21 MB, 3/29/07)

Archived NetAffx Annotation Files

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (8.3 MB, 2/12/09)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (8.3 MB, 2/18/09)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 27 (8.3 MB, 1/16/09)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 28 (8.8 MB, 3/11/09)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 29 (9.6 MB, 7/6/09)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 30 (10 MB, 1/22/10)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 30 (10 MB, 11/9/09)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 31 (10 MB, 9/3/10)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 32 (10 MB, 9/30/11)

HuGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 32 (12 MB, 8/1/12)

HuGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 33 (14 MB, 11/15/12)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 33.2 (9.7 MB, 3/27/13)

HuGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 33.2 (14 MB, 4/2/13)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 34 (10 MB, 4/7/14)

HuGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 34 (17 MB, 4/7/14)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 34.1 (12 MB, 7/23/14)

HuGene-1_0-st-v1 Probeset Annotations, CSV Format, Release 35 (15 MB, 4/15/15)

HuGene-2_0-st-v1 Probeset Annotations, CSV Format, Release 35 (21 MB, 4/15/15)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 22 (11 MB, 6/11/07)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 23 (11 MB, 9/17/07)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 24 (8.3 MB, 11/12/07)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 25 (8.7 MB, 3/20/08)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 26 (11 MB, 7/17/08)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 27 (10 MB, 11/24/08)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 28 (12 MB, 3/11/09)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 29 (14 MB, 7/6/09)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 30 (17 MB, 11/9/09)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 31 (17 MB, 9/3/10)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 32 (18 MB, 6/23/11)

HuGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 32 (19 MB, 7/24/12)

HuGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 33 (32 MB, 11/15/12)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (17 MB, 3/27/13)

HuGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (30 MB, 4/1/13)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 34 (14 MB, 4/7/14)

HuGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 34 (46 MB, 4/7/14)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 34.1 (20 MB, 7/23/14)

HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 35 (52 MB, 4/15/15)

HuGene-2_0-st-v1 Transcript Cluster Annotations, CSV, Release 35 (64 MB, 4/15/15)

Archived Sequence Files

HuGene-1_0-st-v1 Probe Sequences, FASTA format (22 MB, 3/29/07)

HuGene-1_0-st-v1 Probe Sequences, FASTA format (25 MB, 7/13/07)

HuGene-1_0-st-v1 Probe Sequences, FASTA format (25 MB, 2/23/10)

HuGene-1_0-st-v1 Probe Sequences, tabular format (21 MB, 3/29/07)

HuGene-1_0-st-v1 Probe Sequences, tabular format (20 MB, 7/13/07)

HuGene-1_0-st-v1 Probe Sequences, tabular format (21 MB, 2/23/10)

Archived Library Files

Human Gene 1.0 ST Array, Analysis (zip, 17 MB)