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Genome-Wide Human SNP Array 6.0 - Support Materials

For more information, please see the product page.

Product Updates

Product Update, Genome-Wide Human SNP Nsp/Sty Assay 6.0 - Isopropanol Precipitation Method (pdf, 108 KB)

Product Update, Genome-Wide Human SNP Nsp/Sty Assay 6.0 - Agencourt AMPure XP beads (pdf, 153 KB)

Application Notes

A New Paradigm for Two-stage Association Studies (pdf, 144 KB)

Copy-neutral Loss of Heterozygosity in Cancer (pdf, 1.07 MB)

Data Sheets

Automated Genotyping Using the SNP Array 6.0 (pdf, 259 KB)

Genome-Wide Human SNP Array 6.0 (pdf, 846 KB)

Frequently Asked Questions

Genome-Wide Human SNP Array 6.0

Library Files

Genome-Wide Human SNP Array 6.0 (zip, 246 MB)

Genome-Wide Human SNP Array 6.0 Supplemental Analysis Files (zip, 238 KB)

Note: Affymetrix is providing alternative CDF files, for the Affymetrix genotyping array- Genome-Wide Human SNP Array 5.0. These CDF files provide uniform access to the Copy Number probe content by presenting "one probe per probeset" in both the full and default updated CDF files. This uniform access applies to both Affymetrix genotyping arrays with Copy Number content- Genome-Wide Human SNP Array 5.0 and Genome-Wide Human SNP Array 6.0.

Manuals

Affymetrix® Genome-Wide Human SNP Nsp/Sty 6.0 (pdf, 2 MB)

Affymetrix® Human SNP Assay 6.0 User Guide for Automated Target Preparation (pdf, 2.62 MB)

Probe Set Data in MAGE-ML Format

Publications

Genome-Wide Human SNP 6.0 Array (pdf, 152 KB)

Key Publications on the SNP Array 5.0/6.0 Platform for Whole-genome Association Studies (pdf, 194 KB)

Material Safety Data Sheets

Genome-Wide Human SNP 5.0/6.0 Assay Kits, with Reference DNA (zip, 333 KB)

MSDS, SNP 6.0 Core Reagent Kit (zip, 476 KB)

Package Inserts

Genome-Wide Human SNP Array 6.0 (pdf, 102 KB)

Genome-Wide Human SNP Nsp/Sty Assay Kit 5.0/6.0 (pdf, 76 KB)

SNP 6.0 Core Reagent Kit (pdf, 252 KB)

Quick Reference Cards

Affymetrix® Human SNP Assay 6.0 Automated Target Preparation (pdf, 496 KB)

SNP 6.0 Protocol for 48 Samples (pdf, 484 KB)

SNP 6.0 Protocol for 96 Samples (pdf, 503 KB)

Technical Notes

Associating Copy Number and SNP Variation with Human Disease (pdf, 593 KB)

Linking Whole-genome Amplification to SNP Genotyping (pdf, 346 KB)

Use of Saliva gDNA for SNP Genotyping (pdf, 556 KB)

White Papers

Genotyping Console™ Quality Control Assessment (pdf, 1.07 MB)

Additional Support

Fluidics Scripts

Literature and Resource Guide for the Genome-Wide SNP Array 6.0 (pdf, 71 KB)

ReadMe, Genome-Wide Human SNP Array 6.0 Sample Data Set

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

GenomeWideSNP_6 BED File (25 MB, 11/28/07)

Current NetAffx Annotation Files

GenomeWideSNP_6 Annotations, CSV format, Release 34 (286 MB, 9/11/13)

GenomeWideSNP_6 Annotations, SQLite Format, Release 34 (473 MB, 9/11/13)

GenomeWideSNP_6 CN Annotations, CSV format, Release 34 (67 MB, 9/11/13)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference, Release 34 (164 MB, 3/5/14)

GenomeWideSNP_6 GTC Genome Browser File, Release 34 (24 MB, 3/3/14)

GenomeWideSNP_6 Meta Probeset File (805 KB, 5/25/07)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

GenomeWideSNP_6 CN Probe Sequences, tabular format (31 MB, 5/25/07)

GenomeWideSNP_6 Flanking Sequences, FASTA format (12 MB, 5/25/07)

GenomeWideSNP_6 Probe Sequences, tabular format (48 MB, 5/25/07)

Archived NetAffx Annotation Files

GenomeWideSNP_6 Annotations, CSV format, Release 22 (292 MB, 5/25/07)

GenomeWideSNP_6 Annotations, CSV format, Release 23 (291 MB, 7/18/07)

GenomeWideSNP_6 Annotations, CSV format, Release 24 (260 MB, 11/28/07)

GenomeWideSNP_6 Annotations, CSV format, Release 25 (301 MB, 4/29/08)

GenomeWideSNP_6 Annotations, CSV format, Release 26 (301 MB, 10/3/08)

GenomeWideSNP_6 Annotations, CSV format, Release 26 (306 MB, 7/9/08)

GenomeWideSNP_6 Annotations, CSV format, Release 27 (280 MB, 3/25/09)

GenomeWideSNP_6 Annotations, CSV format, Release 28 (281 MB, 3/16/09)

GenomeWideSNP_6 Annotations, CSV format, Release 29 (247 MB, 9/18/09)

GenomeWideSNP_6 Annotations, CSV format, Release 30 (283 MB, 11/15/09)

GenomeWideSNP_6 Annotations, CSV format, Release 31 (306 MB, 1/31/11)

GenomeWideSNP_6 Annotations, CSV format, Release 32 (297 MB, 7/15/11)

GenomeWideSNP_6 Annotations, CSV format, Release 33 (286 MB, 4/29/13)

GenomeWideSNP_6 Annotations, SQLite Format, Release 24 (405 MB, 10/13/09)

GenomeWideSNP_6 Annotations, SQLite Format, Release 25 (461 MB, 10/13/09)

GenomeWideSNP_6 Annotations, SQLite Format, Release 26.1 (487 MB, 10/13/09)

GenomeWideSNP_6 Annotations, SQLite Format, Release 27 (465 MB, 10/13/09)

GenomeWideSNP_6 Annotations, SQLite Format, Release 28 (466 MB, 10/13/09)

GenomeWideSNP_6 Annotations, SQLite Format, Release 29 (418 MB, 10/13/09)

GenomeWideSNP_6 Annotations, SQLite Format, Release 30 (471 MB, 11/15/09)

GenomeWideSNP_6 Annotations, SQLite Format, Release 31 (500 MB, 8/30/10)

GenomeWideSNP_6 Annotations, SQLite Format, Release 32 (494 MB, 6/24/11)

Browser Annotation File, Release 28 (20 MB, 5/4/09)

GenomeWideSNP_6 Browser Annotation File, Release 29 (21 MB, 8/12/09)

GenomeWideSNP_6 Browser Annotation File, Release 30 (21 MB, 1/7/10)

GenomeWideSNP_6 Browser Annotation File, Release 30.1 (21 MB, 3/12/10)

GenomeWideSNP_6 Browser Annotation File, Release 30.2 (21 MB, 5/21/10)

Browser Annotation File, Release 31 (23 MB, 12/14/10)

Browser Annotation File, Release 32 (25 MB, 6/15/11)

GenomeWideSNP_6 CN Annotations, CSV format, Release 22 (24 MB, 5/25/07)

GenomeWideSNP_6 CN Annotations, CSV format, Release 23 (48 MB, 7/18/07)

GenomeWideSNP_6 CN Annotations, CSV format, Release 24 (49 MB, 11/28/07)

GenomeWideSNP_6 CN Annotations, CSV format, Release 25 (53 MB, 4/29/08)

GenomeWideSNP_6 CN Annotations, CSV format, Release 26 (56 MB, 3/19/09)

GenomeWideSNP_6 CN Annotations, CSV format, Release 26 (53 MB, 7/9/08)

GenomeWideSNP_6 CN Annotations, CSV format, Release 27 (56 MB, 12/1/08)

GenomeWideSNP_6 CN Annotations, CSV format, Release 28 (56 MB, 3/6/09)

GenomeWideSNP_6 CN Annotations, CSV format, Release 29 (53 MB, 9/18/09)

GenomeWideSNP_6 CN Annotations, CSV format, Release 30 (63 MB, 11/15/09)

GenomeWideSNP_6 CN Annotations, CSV format, Release 31 (72 MB, 8/30/10)

GenomeWideSNP_6 CN Annotations, CSV format, Release 32 (69 MB, 7/15/11)

GenomeWideSNP_6 CN Annotations, CSV format, Release 33 (68 MB, 4/29/13)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference (149 MB, 6/2/08)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference (149 MB, 10/13/08)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference (149 MB, 7/14/08)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference (149 MB, 12/4/08)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference (149 MB, 3/17/09)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference (146 MB, 7/23/09)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference, Release 30 (164 MB, 11/19/09)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference, Release 31 (203 MB, 9/1/10)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference, Release 32 (164 MB, 6/29/11)

GenomeWideSNP_6 Copy Number Analysis HapMap Reference, Release 33 (164 MB, 5/17/13)