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Genome-Wide Human SNP Array 5.0 - Support Materials

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Product Updates

Product Update, GeneChip® Operating Software (GCOS) Service Pack 2 Software Update

Data Sheets

Genome-Wide Human SNP Array 5.0 (pdf, 589 KB)

Frequently Asked Questions

Genome-Wide Human SNP Array 5.0

Library Files

Alternative CDF Files, Genome-Wide Human SNP Array 5.0 (zip, 70 MB)

Genome-Wide Human SNP Array 5.0 (zip, 90 MB)

Note: Affymetrix is providing alternative CDF files, for the Affymetrix genotyping array- Genome-Wide Human SNP Array 5.0. These CDF files provide uniform access to the Copy Number probe content by presenting "one probe per probeset" in both the full and default updated CDF files. This uniform access applies to both Affymetrix genotyping arrays with Copy Number content- Genome-Wide Human SNP Array 5.0 and Genome-Wide Human SNP Array 6.0.

Manuals

Genome-Wide Human SNP Nsp/Sty Assay 5.0 (pdf, 2.46 MB)

Probe Set Data in MAGE-ML Format

Material Safety Data Sheets

Genome-Wide SNP 5.0/6.0 Assay Kits, without Reference DNA (zip, 292 KB)

Genome-Wide Human SNP 5.0/6.0 Assay Kits, with Reference DNA (zip, 333 KB)

Package Inserts

Genome-Wide Human SNP Array 5.0 (pdf, 138 KB)

Genome-Wide Human SNP Nsp/Sty Assay Kit 5.0/6.0 (pdf, 76 KB)

Sample Data

Genome-Wide Human SNP Array 5.0 Sample Data Set

White Papers

BRLMM-P: a Genotype Calling Method for the SNP 5.0 Array (pdf, 163 KB)

Additional Support

Fluidics Scripts

Genome-Wide SNP 5.0 Array Reference DNA Concordance (zip, 15 MB)

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

GenomeWideSNP_5 SNP Genomic Positions in BED Format (6.1 MB, 2/9/07)

Current NetAffx Annotation Files

GenomeWideSNP_5 Annotations, CSV format, Release 30 (135 MB, 11/15/09)

GenomeWideSNP_5 Annotations, SQLite Format, Release 30 (212 MB, 11/15/09)

GenomeWideSNP_5 CN Annotations, CSV format, Release 30 (24 MB, 11/15/09)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

GenomeWideSNP_5 CN Probe Sequences, tabular format (13 MB, 6/7/07)

GenomeWideSNP_5 Flanking Sequences, FASTA format (5.9 MB, 3/19/07)

GenomeWideSNP_5 Probe Sequences, tabular format (30 MB, 3/16/07)

Archived NetAffx Annotation Files

GenomeWideSNP_5 Annotations, CSV format, Release 22 (132 MB, 3/9/07)

GenomeWideSNP_5 Annotations, CSV format, Release 23 (137 MB, 7/12/07)

GenomeWideSNP_5 Annotations, CSV format, Release 24 (122 MB, 11/28/07)

GenomeWideSNP_5 Annotations, CSV format, Release 25 (144 MB, 4/7/08)

GenomeWideSNP_5 Annotations, CSV format, Release 26 (144 MB, 10/1/08)

GenomeWideSNP_5 Annotations, CSV format, Release 26 (146 MB, 7/9/08)

GenomeWideSNP_5 Annotations, CSV format, Release 27 (132 MB, 11/25/08)