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Human Genome Focus Array - Support Materials

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Frequently Asked Questions

Gene Expression Arrays

Library Files

Human Genome Focus Array (zip, 6.7 MB)

Manuals

3' IVT Express Kit User Manual (pdf, 1.17 MB)

Alignment Data in PSL Format

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

HT 3' IVT Express Kit (pdf 8.41 MB)

Probe Set Data in MAGE-ML Format

Mask Files

Human Genome Focus Array Normalization Controls (zip, 1 KB)

Package Inserts

Human Genome Focus Array (pdf, 513 KB)

Technical Notes

Annotation Methodology

Manufacturing Quality Control and Validation Studies of GeneChip® Arrays (pdf, 3.28 MB)

Additional Support

Fluidics Scripts

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

HG-Focus Alignments to Genome, PSL (1.6 MB, 9/28/06)

Current NetAffx Annotation Files

HG-Focus Annotations, CSV format, Release 30 (5.3 MB, 11/15/09)

HG-Focus Annotations, MAGE-ML XML Format, Release 30 (19 MB, 11/15/09)

HG-Focus BLASTP annotations, CSV Format, Release 30 (2.0 KB, 11/16/09)

HG-Focus Orthologs/Homologs, CSV Format, Release 30 (2.1 MB, 11/15/09)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

HG-Focus Consensus Sequences, FASTA (1.6 MB, 8/20/08)

HG-Focus Control Sequences, FASTA (12 KB, 3/28/03)

HG-Focus Exemplar Sequences, FASTA (5.8 MB, 3/28/03)

HG-Focus Probe Sequences, FASTA (1.7 MB, 8/20/08)

HG-Focus Probe Sequences, Tabular (1.6 MB, 8/20/08)

HG-Focus Target Sequences, FASTA (2.0 MB, 8/20/08)

Archived NetAffx Annotation Files

HG-Focus Annotations, BLASTP, Release 20 (1.5 MB, 7/14/06)

HG-Focus Annotations, BLASTX, Release 20 (833 KB, 6/23/04)

HG-Focus Annotations, CSV format, Release 21 (3.9 MB, 5/31/07)

HG-Focus Annotations, CSV format, Release 22 (4.1 MB, 5/31/07)

HG-Focus Annotations, CSV format, Release 23 (3.8 MB, 7/12/07)

HG-Focus Annotations, CSV format, Release 24 (3.9 MB, 11/6/07)

HG-Focus Annotations, CSV format, Release 25 (4.2 MB, 3/18/08)

HG-Focus Annotations, CSV format, Release 26 (4.7 MB, 7/8/08)

HG-Focus Annotations, CSV format, Release 27 (4.7 MB, 11/30/08)

HG-Focus Annotations, CSV format, Release 28 (4.9 MB, 3/12/09)

HG-Focus Annotations, CSV format, Release 29 (5.0 MB, 7/1/09)

HG-Focus Annotations, CSV, Release 20 (3.9 MB, 5/31/07)

HG-Focus Annotations, MAGE-ML XML format, Release 21 (19 MB, 6/15/07)

HG-Focus Annotations, MAGE-ML XML Format, Release 22 (17 MB, 6/15/07)

HG-Focus Annotations, MAGE-ML XML Format, Release 23 (17 MB, 7/12/07)

HG-Focus Annotations, MAGE-ML XML Format, Release 24 (17 MB, 11/6/07)

HG-Focus Annotations, MAGE-ML XML Format, Release 25 (17 MB, 3/18/08)

HG-Focus Annotations, MAGE-ML XML Format, Release 26 (18 MB, 7/8/08)

HG-Focus Annotations, MAGE-ML XML Format, Release 27 (18 MB, 11/24/08)

HG-Focus Annotations, MAGE-ML XML Format, Release 28 (19 MB, 3/12/09)

HG-Focus Annotations, MAGE-ML XML Format, Release 29 (19 MB, 7/1/09)

HG-Focus Annotations, MAGE-ML XML, Release 20 (18 MB, 6/15/07)

HG-Focus Annotations, Orthologs, Release 20 (1.7 MB, 8/21/06)

HG-Focus BLASTP annotations, CSV format, Release 21 (1.5 MB, 11/15/06)

HG-Focus BLASTP annotations, CSV Format, Release 22 (9.1 KB, 3/9/07)

HG-Focus BLASTP annotations, CSV Format, Release 23 (7.7 KB, 7/12/07)

HG-Focus BLASTP annotations, CSV Format, Release 24 (733 B, 11/6/07)

HG-Focus BLASTP annotations, CSV Format, Release 25 (2.4 KB, 3/18/08)

HG-Focus BLASTP annotations, CSV Format, Release 26 (1.6 KB, 7/8/08)

HG-Focus BLASTP annotations, CSV Format, Release 27 (5.3 KB, 11/24/08)

HG-Focus BLASTP annotations, CSV Format, Release 28 (573 B, 3/4/09)

HG-Focus BLASTP annotations, CSV Format, Release 29 (573 B, 7/1/09)

HG-Focus Orthologs/Homologs, CSV format, Release 21 (1.7 MB, 11/30/06)

HG-Focus Orthologs/Homologs, CSV Format, Release 22 (1.9 MB, 3/9/07)

HG-Focus Orthologs/Homologs, CSV Format, Release 23 (1.9 MB, 7/12/07)

HG-Focus Orthologs/Homologs, CSV Format, Release 24 (1.8 MB, 11/6/07)

HG-Focus Orthologs/Homologs, CSV Format, Release 25 (1.8 MB, 3/18/08)

HG-Focus Orthologs/Homologs, CSV Format, Release 26 (1.9 MB, 7/8/08)

HG-Focus Orthologs/Homologs, CSV Format, Release 27 (2.0 MB, 11/24/08)

HG-Focus Orthologs/Homologs, CSV Format, Release 28 (2.2 MB, 3/12/09)

HG-Focus Orthologs/Homologs, CSV Format, Release 29 (2.1 MB, 7/1/09)