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Drosophila Genome Array - Support Materials

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Array Comparisons

Drosophila Genome to Drosophila Genome 2.0, Best Match (zip, 158 KB)

Drosophila Genome to Drosophila Genome 2.0, Complex Match (zip, 512 KB)

Drosophila Genome to Drosophila Genome 2.0, Good Match (zip, 159 KB)

Drosophila Genome to Drosophila Genome 2.0, No Match (zip, 2 KB)

Frequently Asked Questions

Gene Expression Arrays

Library Files

Drosophila Genome Array (zip, 10 MB)

Manuals

3' IVT Express Kit User Manual (pdf, 1.17 MB)

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

HT 3' IVT Express Kit (pdf, 8.41 MB)

Package Inserts

Drosophila Genome Array (pdf, 494 KB)

Technical Notes

Annotation Methodology

Manufacturing Quality Control and Validation Studies of GeneChip® Arrays (pdf, 3.28 MB)

Additional Support

Fluidics Scripts

Probe Set Data in MAGE-ML Format

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

DrosGenome1 Alignments To Genome, PSL Format (1.4 MB, 11/17/06)

Current NetAffx Annotation Files

DrosGenome1 Annotations, CSV format, Release 36 (7.6 MB, 4/13/16)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 36 (2.7 MB, 4/13/16)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

DrosGenome1 Consensus Sequences, FASTA (7.9 MB, 8/20/08)

DrosGenome1 Control Sequences, FASTA (15 KB, 4/20/04)

DrosGenome1 Exemplar Sequences, FASTA (8.0 MB, 3/28/03)

DrosGenome1 Probe Sequences, FASTA (3.5 MB, 8/20/08)

DrosGenome1 Probe Sequences, Tabular (3.1 MB, 8/20/08)

DrosGenome1 Target Sequences, FASTA (2.7 MB, 8/20/08)

Archived NetAffx Alignment Files

DrosGenome1 Alignments to Genome, PSL (1.4 MB, 12/4/08)

Archived NetAffx Annotation Files

DrosGenome1 Annotations, BLASTP, Release 20 (1.0 MB, 7/14/06)

DrosGenome1 Annotations, CSV format, Release 21 (4.1 MB, 5/31/07)

DrosGenome1 Annotations, CSV format, Release 22 (4.8 MB, 5/31/07)

DrosGenome1 Annotations, CSV format, Release 23 (4.8 MB, 7/12/07)

DrosGenome1 Annotations, CSV format, Release 24 (4.8 MB, 11/6/07)

DrosGenome1 Annotations, CSV format, Release 25 (4.8 MB, 3/18/08)

DrosGenome1 Annotations, CSV format, Release 26 (4.9 MB, 7/8/08)

DrosGenome1 Annotations, CSV format, Release 27 (4.9 MB, 11/30/08)

DrosGenome1 Annotations, CSV format, Release 28 (4.9 MB, 3/12/09)

DrosGenome1 Annotations, CSV format, Release 29 (5.6 MB, 7/1/09)

DrosGenome1 Annotations, CSV format, Release 30 (5.6 MB, 11/15/09)

DrosGenome1 Annotations, CSV format, Release 31 (5.8 MB, 8/23/10)

DrosGenome1 Annotations, CSV format, Release 32 (5.9 MB, 6/9/11)

DrosGenome1 Annotations, CSV format, Release 33 (6.5 MB, 10/30/12)

DrosGenome1 Annotations, CSV format, Release 34 (7.3 MB, 1/23/14)

DrosGenome1 Annotations, CSV format, Release 35 (7.5 MB, 10/7/14)

DrosGenome1 Annotations, CSV, Release 20 (4.1 MB, 5/31/07)

DrosGenome1 Annotations, MAGE-ML XML format, Release 21 (23 MB, 6/15/07)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 22 (22 MB, 6/15/07)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 23 (22 MB, 7/12/07)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 24 (22 MB, 11/6/07)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 25 (22 MB, 3/18/08)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 26 (23 MB, 7/8/08)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 27 (23 MB, 11/24/08)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 28 (23 MB, 3/12/09)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 29 (24 MB, 7/1/09)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 30 (25 MB, 11/15/09)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 31 (25 MB, 8/23/10)

DrosGenome1 Annotations, MAGE-ML XML Format, Release 32 (25 MB, 6/9/11)

DrosGenome1 Annotations, MAGE-ML XML, Release 20 (23 MB, 6/15/07)

DrosGenome1 Annotations, Orthologs, Release 20 (1.9 MB, 8/21/06)

DrosGenome1 BLASTP annotations, CSV format, Release 21 (1015 KB, 11/15/06)

DrosGenome1 BLASTP annotations, CSV Format, Release 22 (22 KB, 3/9/07)

DrosGenome1 BLASTP annotations, CSV Format, Release 23 (22 KB, 7/12/07)

DrosGenome1 BLASTP annotations, CSV Format, Release 24 (22 KB, 11/6/07)

DrosGenome1 BLASTP annotations, CSV Format, Release 25 (30 KB, 3/18/08)

DrosGenome1 BLASTP annotations, CSV Format, Release 26 (25 KB, 7/8/08)

DrosGenome1 BLASTP annotations, CSV Format, Release 27 (31 KB, 11/24/08)

DrosGenome1 BLASTP annotations, CSV Format, Release 28 (34 KB, 3/4/09)

DrosGenome1 BLASTP annotations, CSV Format, Release 29 (18 KB, 7/1/09)

DrosGenome1 BLASTP annotations, CSV Format, Release 30 (23 KB, 11/16/09)

DrosGenome1 BLASTP annotations, CSV Format, Release 31 (16 KB, 8/11/10)

DrosGenome1 BLASTP annotations, CSV Format, Release 32 (45 KB, 6/9/11)

DrosGenome1 Orthologs/Homologs, CSV format, Release 21 (1.9 MB, 11/30/06)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 22 (2.1 MB, 3/9/07)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 23 (2.1 MB, 7/12/07)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 24 (1.9 MB, 11/6/07)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 25 (1.9 MB, 3/18/08)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 26 (2.0 MB, 7/8/08)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 27 (2.1 MB, 11/24/08)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 28 (2.3 MB, 3/12/09)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 29 (2.3 MB, 7/1/09)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 30 (2.3 MB, 11/15/09)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 31 (2.3 MB, 8/11/10)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 32 (2.3 MB, 6/9/11)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 33 (2.7 MB, 10/30/12)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 34 (2.9 MB, 1/23/14)

DrosGenome1 Orthologs/Homologs, CSV Format, Release 35 (2.7 MB, 10/7/14)