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CytoScan® HD Array Kit and Reagent Kit Bundle - Support Materials

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Application Notes

Unlock FFPE Samples using CytoScan® Array (pdf, 2.59 MB)

Brochure

CytoScan® Cytogenetics Suite (pdf, 3.55 MB)

Data Sheets

CytoScan® HD Suite (pdf, 240 KB)

Frequently Asked Questions

FAQ, CytoScan® Assay and CytoScan® HD Array (pdf, 169 KB)

Library Files

AGCC CytoScan® HD Array Library Files (zip, 91.7 MB)

ChAS 2.1 Analysis Files for the CytoScan® HD Array version NA32.3 (zip, 1.1 GB)

ChAS 2.1 Analysis Files for the CytoScan® HD Array version NA33 (zip, 1.2 GB)

ChAS 3.1 Analysis Files for the CytoScan® HD Array version NA33.1 (zip, 1.1 GB)

Manuals

CytoScan® Assay User Manual (pdf, 6.09 MB)

CytoScan® Assay, Site Prep Guide (pdf, 287 KB)

CytoScan® HD Assay Software Module, User Guide (pdf, 845 KB)

Safety Data Sheets

CytoScan® HD Array Kit and Reagent Kit Bundle (zip, 500 KB)

Package Inserts

CytoScan™ Amplification kit (pdf, 312 KB)

CytoScan® HD Array (pdf, 136 KB)

CytoScan® Reagent Kit (pdf, 102 KB)

Quick Reference Cards

CytoScan® Assay 16 Samples: Workflow Overview (pdf, 1.86 MB)

CytoScan® Assay 24 Samples: Workflow Overview (pdf, 1.91 MB)

CytoScan® Assay 8 Samples: Workflow Overview (pdf, 1.55 MB)

Sample Data

CytoScan® HD Array Sample Data Files (zip, 1.6 GB)

CytoScan® HD Array Sample Dataset Presentation (pdf, 3.13 MB)

Scientist Spotlight

Unraveling the complexities of the cancer genome and guiding patient-tailored treatment strategies (pdf, 1 MB)

Tutorials

Watch online ChAS general training videos

Additional Support

Fluidics Scripts

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

CytoScanHD_Array BED File (41 MB, 11/27/12)

Current NetAffx Annotation Files

CytoScanHD_Array Annotations, CSV format, Release 33 (241 MB, 7/18/14)

CytoScanHD_Array Annotations, SQLite Format, Release 33 (602 MB, 7/9/14)

CytoScanHD_Array Annotations, SQLite Format, Release 36 (288 MB, 6/2/17)

Browser Annotation File, Release 32.1 (24 MB, 1/12/12)

CytoScanHD_Array CN Annotations, CSV format, Release 32.3 (128 MB, 11/27/12)

CytoScanHD_Array CN Annotations, CSV format, Release 33 (349 MB, 7/18/14)

CytoScanHD_Array Copy Number Reference Model File (457 MB, 6/2/17)

CytoScanHD_Array Copy Number Reference Model File (457 MB, 6/2/17)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

CytoScanHD_Array Probe Sequences, tabular format (102 MB, 12/9/11)

Archived NetAffx Annotation Files

CytoScanHD_Array Annotations, CSV format, Release 32 (272 MB, 7/15/11)

CytoScanHD_Array Annotations, CSV format, Release 32.1 (272 MB, 12/1/11)

CytoScanHD_Array Annotations, CSV format, Release 32.3 (272 MB, 11/27/12)

CytoScanHD_Array Annotations, SQLite Format, Release 32 (580 MB, 6/3/11)

CytoScanHD_Array Annotations, SQLite Format, Release 32.1 (557 MB, 1/12/12)

CytoScanHD_Array Annotations, SQLite Format, Release 32.3 (565 MB, 5/1/13)

Browser Annotation File, Release 31 (23 MB, 12/14/10)

Browser Annotation File, Release 32 (25 MB, 6/15/11)

CytoScanHD_Array CN Annotations, CSV format, Release 32 (128 MB, 7/15/11)

CytoScanHD_Array CN Annotations, CSV format, Release 32.1 (128 MB, 12/1/11)

CytoScanHD_Array Copy Number Analyisis HapMap Reference, Release 32 (325 MB, 6/3/11)

CytoScanHD_Array Copy Number Analysis HapMap Reference (327 MB, 11/30/15)

CytoScanHD_Array Copy Number Analysis HapMap Reference, Release 32.1 (325 MB, 1/13/12)

CytoScanHD_Array Copy Number Analysis HapMapReference, Release 32.3 (316 MB, 1/16/13)

CytoScanHD_Array Copy Number Reference Model File (325 MB, 2/25/14)

CytoScanHD_Array Copy Number Reference Model File (325 MB, 1/5/15)

Archived Library Files

ChAS 3.0 Analysis Files for the CytoScan® HD Array version NA33.1 (zip, 1.1 GB)

ChAS Analysis Files for the CytoScan® HD Array version NA32 (zip, 1.09 GB, 2/13/12)

ChAS Analysis Files for the CytoScan® HD Array version NA32.1 (zip, 1.05 GB 2/13/12)