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Cotton Genome Array - Support Materials

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Frequently Asked Questions

Gene Expression Arrays

Library Files

Cotton Genome Array (zip, 14 MB)

Manuals

3' IVT Express Kit User Manual (pdf, 1.17 MB)

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

HT 3' IVT Express Kit (pdf, 8.41 MB)

Package Inserts

Cotton Genome Array (pdf, 209 KB)

Additional Support

Fluidics Scripts

Probe Set Data in MAGE-ML Format

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

Current NetAffx Annotation Files

Cotton Annotations, CSV format, Release 36 (2.3 MB, 4/13/16)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

Cotton Consensus Sequences FASTA Format (7.1 MB, 11/9/06)

Cotton Control Sequences FASTA Format (58 KB, 11/9/06)

Cotton Probe Sequences, FASTA format (4.7 MB, 11/9/06)

Cotton Probe Sequences, tabular format (4.3 MB, 11/9/06)

Cotton Target Sequences FASTA Format (4.0 MB, 11/9/06)

Archived NetAffx Annotation Files

Cotton Annotations, CSV format, Release 21 (2.5 MB, 5/31/07)

Cotton Annotations, CSV format, Release 22 (2.5 MB, 5/31/07)

Cotton Annotations, CSV format, Release 23 (2.5 MB, 7/12/07)

Cotton Annotations, CSV format, Release 24 (2.4 MB, 11/6/07)

Cotton Annotations, CSV format, Release 25 (2.4 MB, 3/18/08)

Cotton Annotations, CSV format, Release 26 (2.5 MB, 7/8/08)

Cotton Annotations, CSV format, Release 27 (2.2 MB, 11/30/08)

Cotton Annotations, CSV format, Release 28 (2.2 MB, 3/12/09)

Cotton Annotations, CSV format, Release 29 (2.2 MB, 7/1/09)

Cotton Annotations, CSV format, Release 30 (2.2 MB, 11/15/09)

Cotton Annotations, CSV format, Release 31 (2.2 MB, 8/11/10)

Cotton Annotations, CSV format, Release 32 (2.2 MB, 6/9/11)

Cotton Annotations, CSV format, Release 33 (2.3 MB, 10/30/12)

Cotton Annotations, CSV format, Release 34 (2.3 MB, 1/23/14)

Cotton Annotations, CSV format, Release 35 (2.3 MB, 10/7/14)

Cotton Annotations, MAGE-ML XML format, Release 21 (17 MB, 6/15/07)

Cotton Annotations, MAGE-ML XML Format, Release 22 (17 MB, 6/15/07)

Cotton Annotations, MAGE-ML XML Format, Release 23 (17 MB, 7/12/07)

Cotton Annotations, MAGE-ML XML Format, Release 24 (17 MB, 11/6/07)

Cotton Annotations, MAGE-ML XML Format, Release 25 (17 MB, 3/18/08)

Cotton Annotations, MAGE-ML XML Format, Release 26 (17 MB, 7/8/08)

Cotton Annotations, MAGE-ML XML Format, Release 27 (16 MB, 11/24/08)

Cotton Annotations, MAGE-ML XML Format, Release 28 (16 MB, 3/12/09)

Cotton Annotations, MAGE-ML XML Format, Release 29 (16 MB, 7/1/09)

Cotton Annotations, MAGE-ML XML Format, Release 30 (16 MB, 11/15/09)

Cotton Annotations, MAGE-ML XML Format, Release 31 (16 MB, 8/11/10)

Cotton Annotations, MAGE-ML XML Format, Release 32 (16 MB, 6/9/11)

Cotton BLASTP annotations, CSV Format, Release 24 (3.3 KB, 11/6/07)

Cotton BLASTP annotations, CSV Format, Release 25 (2.0 KB, 3/18/08)

Cotton BLASTP annotations, CSV Format, Release 26 (4.9 KB, 7/8/08)

Cotton BLASTP annotations, CSV Format, Release 28 (3.5 KB, 3/4/09)

Cotton BLASTP annotations, CSV Format, Release 29 (5.6 KB, 7/1/09)

Cotton BLASTP annotations, CSV Format, Release 30 (7.5 KB, 11/16/09)

Cotton BLASTP annotations, CSV Format, Release 31 (7.5 KB, 8/11/10)