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C. elegans Genome Array - Support Materials

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Frequently Asked Questions

Gene Expression Arrays

Library Files

C. elegans Genome Array (zip, 12 MB)

Manuals

3' IVT Express Kit User Manual (pdf, 1.17 MB)

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

HT 3' IVT Express Kit (pdf 8.41 MB)

Probe Set Data in MAGE-ML Format

Package Inserts

C.elegans Genome Array (pdf, 643 KB)

Technical Notes

Manufacturing Quality Control and Validation Studies of GeneChip® Arrays (pdf, 3.28 MB)

Additional Support

Fluidics Scripts

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

Celegans Alignments To Genome, PSL Format (2.4 MB, 12/4/08)

Current NetAffx Annotation Files

Celegans Annotations, CSV format, Release 30 (4.6 MB, 11/15/09)

Celegans Annotations, MAGE-ML XML Format, Release 30 (28 MB, 11/15/09)

Celegans BLASTP annotations, CSV Format, Release 30 (1.9 KB, 11/16/09)

Celegans Orthologs/Homologs, CSV Format, Release 30 (3.0 MB, 11/15/09)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

Celegans Control Sequences, FASTA (27 KB, 3/28/03)

Celegans Exemplar Sequences, FASTA (9.0 MB, 3/28/03)

Celegans Probe Sequences, FASTA (4.4 MB, 8/20/08)

Celegans Probe Sequences, Tabular (4.0 MB, 8/20/08)

Celegans Target Sequences, FASTA (3.8 MB, 8/20/08)

Archived NetAffx Alignment Files

Celegans Alignments To Genome, PSL Format (2.4 MB, 11/17/06)

Archived NetAffx Annotation Files

Celegans Annotations, BLASTP, Release 20 (1.6 MB, 7/14/06)

Celegans Annotations, CSV format, Release 21 (4.9 MB, 5/31/07)

Celegans Annotations, CSV format, Release 22 (5.0 MB, 5/31/07)

Celegans Annotations, CSV format, Release 23 (5.3 MB, 7/12/07)

Celegans Annotations, CSV format, Release 24 (4.5 MB, 11/6/07)

Celegans Annotations, CSV format, Release 25 (4.0 MB, 3/19/08)

Celegans Annotations, CSV format, Release 26 (4.3 MB, 7/8/08)

Celegans Annotations, CSV format, Release 27 (4.6 MB, 11/30/08)

Celegans Annotations, CSV format, Release 28 (4.6 MB, 3/12/09)

Celegans Annotations, CSV format, Release 29 (4.5 MB, 7/1/09)

Celegans Annotations, CSV, Release 20 (4.9 MB, 5/31/07)

Celegans Annotations, MAGE-ML XML format, Release 21 (26 MB, 6/15/07)

Celegans Annotations, MAGE-ML XML Format, Release 22 (26 MB, 6/15/07)

Celegans Annotations, MAGE-ML XML Format, Release 23 (27 MB, 7/12/07)

Celegans Annotations, MAGE-ML XML Format, Release 24 (26 MB, 11/6/07)

Celegans Annotations, MAGE-ML XML Format, Release 25 (26 MB, 3/19/08)

Celegans Annotations, MAGE-ML XML Format, Release 26 (26 MB, 7/8/08)

Celegans Annotations, MAGE-ML XML Format, Release 27 (27 MB, 11/24/08)

Celegans Annotations, MAGE-ML XML Format, Release 28 (28 MB, 3/12/09)

Celegans Annotations, MAGE-ML XML Format, Release 29 (28 MB, 7/1/09)

Celegans Annotations, MAGE-ML XML, Release 20 (26 MB, 6/15/07)

Celegans Annotations, Orthologs, Release 20 (1.5 MB, 8/21/06)

Celegans BLASTP annotations, CSV format, Release 21 (1.8 MB, 11/15/06)

Celegans BLASTP annotations, CSV Format, Release 22 (1.2 MB, 3/9/07)

Celegans BLASTP annotations, CSV Format, Release 23 (34 KB, 7/12/07)

Celegans BLASTP annotations, CSV Format, Release 25 (1.8 KB, 3/18/08)

Celegans BLASTP annotations, CSV Format, Release 26 (489 B, 7/8/08)

Celegans BLASTP annotations, CSV Format, Release 27 (1.5 KB, 11/24/08)

Celegans Orthologs/Homologs, CSV format, Release 21 (1.5 MB, 11/30/06)

Celegans Orthologs/Homologs, CSV Format, Release 22 (1.6 MB, 3/9/07)

Celegans Orthologs/Homologs, CSV Format, Release 23 (2.5 MB, 7/12/07)

Celegans Orthologs/Homologs, CSV Format, Release 24 (2.4 MB, 11/6/07)

Celegans Orthologs/Homologs, CSV Format, Release 25 (2.5 MB, 3/18/08)

Celegans Orthologs/Homologs, CSV Format, Release 26 (2.4 MB, 7/8/08)

Celegans Orthologs/Homologs, CSV Format, Release 27 (2.6 MB, 11/24/08)

Celegans Orthologs/Homologs, CSV Format, Release 28 (3.3 MB, 3/12/09)

Celegans Orthologs/Homologs, CSV Format, Release 29 (3.0 MB, 7/1/09)