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Arabidopsis ATH1 Genome Array - Support Materials

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Array Comparisons

ATGenome1 to ATH1-12501, Best Match (zip, 123 KB)

ATGenome1 to ATH1-12501, Complex (zip, 147 KB)

ATGenome1 to ATH1-12501, Good Match (zip, 123 KB)

ATGenome1 to ATH1-12501, No Match (zip, 2 KB)

Data Sheets

Arabidopsis ATH1 Genome Array (pdf, 466 KB)

Arabidopsis ATH1 Genome Array (pdf, 86 KB) - Japanese Version

Made-to-Order Program (pdf, 144 KB)

Frequently Asked Questions

Gene Expression Arrays

Library Files

Arabidopsis ATH1 Genome Array (zip, 13 MB)

Manuals

3' IVT Express Kit User Manual (pdf, 1.17 MB)

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

HT 3' IVT Express Kit (pdf, 8.41 MB)

Package Inserts

Arabidopsis ATH1 Genome Array (pdf, 487 KB)

Technical Notes

Annotation Methodology

Manufacturing Quality Control and Validation Studies of GeneChip® Arrays (pdf, 3.28 MB)

Additional Support

Fluidics Scripts

Probe Set Data in MAGE-ML Format

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

ATH1-121501 Alignments To Genome, PSL Format (2.5 MB, 11/17/06)

Current NetAffx Annotation Files

ATH1-121501 Annotations, CSV format, Release 36 (8.7 MB, 4/13/16)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 36 (2.3 MB, 4/13/16)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

ATH1-121501 Control Sequences, FASTA (17 KB, 3/28/03)

ATH1-121501 Exemplar Sequences, FASTA (19 MB, 5/26/04)

ATH1-121501 Probe Sequences, FASTA (4.5 MB, 8/20/08)

ATH1-121501 Probe Sequences, Tabular (4.1 MB, 8/20/08)

ATH1-121501 Target Sequences, FASTA (4.1 MB, 8/20/08)

Archived NetAffx Annotation Files

ATH1-121501 Annotations, BLASTP, Release 20 (2.1 MB, 7/14/06)

ATH1-121501 Annotations, CSV format, Release 21 (5.1 MB, 5/31/07)

ATH1-121501 Annotations, CSV format, Release 22 (4.9 MB, 5/31/07)

ATH1-121501 Annotations, CSV format, Release 23 (4.6 MB, 7/12/07)

ATH1-121501 Annotations, CSV format, Release 24 (4.7 MB, 11/6/07)

ATH1-121501 Annotations, CSV format, Release 25 (4.8 MB, 3/18/08)

ATH1-121501 Annotations, CSV format, Release 26 (5.7 MB, 7/8/08)

ATH1-121501 Annotations, CSV format, Release 27 (5.6 MB, 11/30/08)

ATH1-121501 Annotations, CSV format, Release 28 (5.5 MB, 3/12/09)

ATH1-121501 Annotations, CSV format, Release 29 (6.3 MB, 7/1/09)

ATH1-121501 Annotations, CSV format, Release 30 (6.5 MB, 11/15/09)

ATH1-121501 Annotations, CSV format, Release 31 (6.4 MB, 8/11/10)

ATH1-121501 Annotations, CSV format, Release 32 (6.1 MB, 6/9/11)

ATH1-121501 Annotations, CSV format, Release 33 (8.0 MB, 10/30/12)

ATH1-121501 Annotations, CSV format, Release 34 (9.0 MB, 1/23/14)

ATH1-121501 Annotations, CSV format, Release 35 (8.8 MB, 10/7/14)

ATH1-121501 Annotations, CSV, Release 20 (5.0 MB, 5/31/07)

ATH1-121501 Annotations, MAGE-ML XML format, Release 21 (28 MB, 6/15/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 22 (28 MB, 6/15/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 23 (27 MB, 7/12/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 24 (26 MB, 11/6/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 25 (25 MB, 3/18/08)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 26 (29 MB, 7/8/08)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 27 (30 MB, 11/24/08)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 28 (27 MB, 3/12/09)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 29 (31 MB, 7/1/09)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 30 (31 MB, 11/15/09)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 31 (31 MB, 8/11/10)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 32 (28 MB, 6/9/11)

ATH1-121501 Annotations, MAGE-ML XML, Release 20 (28 MB, 6/15/07)

ATH1-121501 Annotations, Orthologs, Release 20 (1.2 MB, 8/21/06)

ATH1-121501 BLASTP annotations, CSV format, Release 21 (2.1 MB, 11/15/06)

ATH1-121501 BLASTP annotations, CSV Format, Release 22 (1.9 MB, 3/9/07)

ATH1-121501 BLASTP annotations, CSV Format, Release 23 (1.9 MB, 7/12/07)

ATH1-121501 BLASTP annotations, CSV Format, Release 24 (171 KB, 11/6/07)

ATH1-121501 BLASTP annotations, CSV Format, Release 25 (4.9 KB, 3/18/08)

ATH1-121501 BLASTP annotations, CSV Format, Release 26 (2.0 MB, 7/8/08)

ATH1-121501 BLASTP annotations, CSV Format, Release 27 (2.4 MB, 11/24/08)

ATH1-121501 BLASTP annotations, CSV Format, Release 28 (2.4 KB, 3/4/09)

ATH1-121501 BLASTP annotations, CSV Format, Release 29 (1.7 MB, 7/1/09)

ATH1-121501 BLASTP annotations, CSV Format, Release 30 (1.6 MB, 11/16/09)

ATH1-121501 BLASTP annotations, CSV Format, Release 31 (1.6 MB, 8/11/10)

ATH1-121501 BLASTP annotations, CSV Format, Release 32 (3.4 KB, 6/9/11)

ATH1-121501 Orthologs/Homologs, CSV format, Release 21 (1.2 MB, 11/30/06)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 22 (1.3 MB, 3/9/07)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 23 (1.3 MB, 7/12/07)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 24 (1.2 MB, 11/6/07)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 25 (1.2 MB, 3/18/08)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 26 (1.3 MB, 7/8/08)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 27 (1.4 MB, 11/24/08)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 28 (1.8 MB, 3/12/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 29 (1.7 MB, 7/1/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 30 (1.8 MB, 11/15/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 31 (1.8 MB, 8/11/10)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 32 (1.7 MB, 6/9/11)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 33 (2.4 MB, 10/30/12)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 34 (2.5 MB, 1/23/14)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 35 (2.3 MB, 10/7/14)