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Xenopus tropicalis Genome Array - Support Materials

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Frequently Asked Questions

Gene Expression Arrays

Library Files

Xenopus tropicalis Genome Array (zip, 31 MB)

Manuals

3' IVT Express Kit User Manual (pdf, 1.17 MB)

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

HT 3' IVT Express Kit (pdf, 8.41 MB)

Package Inserts

Xenopus tropicalis Genome Array (pdf, 152 KB)

Additional Support

Fluidics Scripts

Probe Set Data in MAGE-ML Format

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

Current NetAffx Annotation Files

X_tropicalis Annotations, CSV format, Release 36 (9.9 MB, 4/13/16)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

X_tropicalis Consensus Sequences FASTA Format (24 MB, 1/9/07)

X_tropicalis Control Sequences FASTA Format (58 KB, 1/9/07)

X_tropicalis Probe Sequences, FASTA format (11 MB, 1/9/07)

X_tropicalis Probe Sequences, tabular format (10 MB, 1/9/07)

X_tropicalis Target Sequences FASTA Format (10 MB, 1/9/07)

Archived NetAffx Annotation Files

X_tropicalis Annotations, CSV format, Release 22 (2.7 MB, 5/31/07)

X_tropicalis Annotations, CSV format, Release 23 (7.7 MB, 10/2/07)

X_tropicalis Annotations, CSV format, Release 24 (8.9 MB, 11/6/07)

X_tropicalis Annotations, CSV format, Release 25 (8.9 MB, 3/18/08)

X_tropicalis Annotations, CSV format, Release 26 (8.9 MB, 7/8/08)

X_tropicalis Annotations, CSV format, Release 27 (8.9 MB, 11/30/08)

X_tropicalis Annotations, CSV format, Release 28 (8.5 MB, 3/12/09)

X_tropicalis Annotations, CSV format, Release 29 (8.5 MB, 7/1/09)

X_tropicalis Annotations, CSV format, Release 30 (8.5 MB, 11/15/09)

X_tropicalis Annotations, CSV format, Release 31 (8.7 MB, 8/11/10)

X_tropicalis Annotations, CSV format, Release 32 (8.5 MB, 6/10/11)

X_tropicalis Annotations, CSV format, Release 33 (8.8 MB, 10/30/12)

X_tropicalis Annotations, CSV format, Release 34 (9.2 MB, 1/23/14)

X_tropicalis Annotations, CSV format, Release 35 (9.3 MB, 10/7/14)

X_tropicalis Annotations, MAGE-ML XML Format, Release 22 (42 MB, 6/15/07)

X_tropicalis Annotations, MAGE-ML XML Format, Release 23 (48 MB, 10/2/07)

X_tropicalis Annotations, MAGE-ML XML Format, Release 24 (49 MB, 11/6/07)

X_tropicalis Annotations, MAGE-ML XML Format, Release 25 (49 MB, 3/18/08)

X_tropicalis Annotations, MAGE-ML XML Format, Release 26 (49 MB, 7/8/08)

X_tropicalis Annotations, MAGE-ML XML Format, Release 27 (52 MB, 11/24/08)

X_tropicalis Annotations, MAGE-ML XML Format, Release 28 (49 MB, 3/12/09)

X_tropicalis Annotations, MAGE-ML XML Format, Release 29 (49 MB, 7/1/09)

X_tropicalis Annotations, MAGE-ML XML Format, Release 30 (49 MB, 11/15/09)

X_tropicalis Annotations, MAGE-ML XML Format, Release 31 (49 MB, 8/11/10)

X_tropicalis Annotations, MAGE-ML XML Format, Release 32 (49 MB, 6/9/11)

X_tropicalis BLASTP annotations, CSV Format, Release 24 (75 KB, 11/6/07)

X_tropicalis BLASTP annotations, CSV Format, Release 25 (13 KB, 3/18/08)

X_tropicalis BLASTP annotations, CSV Format, Release 26 (5.8 KB, 7/8/08)

X_tropicalis BLASTP annotations, CSV Format, Release 27 (2.0 MB, 11/24/08)

X_tropicalis BLASTP annotations, CSV Format, Release 28 (21 KB, 3/4/09)

X_tropicalis BLASTP annotations, CSV Format, Release 29 (2.5 KB, 7/1/09)

X_tropicalis BLASTP annotations, CSV Format, Release 30 (2.5 KB, 11/16/09)

X_tropicalis BLASTP annotations, CSV Format, Release 31 (2.5 KB, 8/11/10)