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Mouse Diversity Genotyping Array - Support Materials

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Data Sheets

Affymetrix® Mouse Diversity Genotyping Array (pdf 1.0 MB)

Affymetrix' tools for model organism research (pdf, 88 KB)

Frequently Asked Questions

Mouse Diversity Genotyping Array (pdf, 109 KB)

Mouse Diversity Genotyping Array (pdf, 114 KB)

Library Files

Mouse Diversity Array, AGCC Library Files (zip, 80.1 MB)

Mouse Diversity Array, Analysis Files (zip, 112 MB)

Mouse Diversity Array, Annotation Converter (zip, 4 KB)

Manuals

Affymetrix® Genome-Wide Human SNP Nsp/Sty 6.0 (pdf, 2.07 MB)

Safety Data Sheets

Genome-Wide Human SNP 5.0/6.0 Assay Kits, with Reference DNA (zip, 333 KB)

MSDS, SNP 6.0 Core Reagent Kit (zip, 476 KB)

Package Inserts

Genome-Wide Human SNP Nsp/Sty Assay Kit 5.0/6.0 (pdf, 76 KB)

Mouse Diversity Genotyping Array (pdf, 72 KB)

Quick Reference Cards

SNP 6.0 Protocol for 48 Samples (pdf, 484 KB)

SNP 6.0 Protocol for 96 Samples (pdf, 503 KB)

Sample Data

Mouse Diversity Genotyping Array, Sample Data 1 of 5 (zip, 898 MB)

Mouse Diversity Genotyping Array, Sample Data 2 of 5 (zip, 897 MB)

Mouse Diversity Genotyping Array, Sample Data 3 of 5 (zip, 912 MB)

Mouse Diversity Genotyping Array, Sample Data 4 of 5 (zip, 902 MB)

Mouse Diversity Genotyping Array, Sample Data 5 of 5 (zip, 861 MB)

Additional Support

Fluidics Scripts

Genotype and QC Sample Output Files (zip, 131 MB)

Genotype and QC Support Files (zip, 112 MB)

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

Current NetAffx Annotation Files

MOUSEDIVm520650 Annotations, CSV format, Release 35 (34 MB, 4/15/15)

MOUSEDIVm520650 Annotations, SQLite Format, Release 35 (58 MB, 4/15/15)

MOUSEDIVm520650 CN Annotations, CSV format, Release 35 (31 MB, 4/15/15)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

MOUSEDIVm520650 CN Probe Sequences, tabular format (28 MB, 12/1/10)

MOUSEDIVm520650 Probe Sequences, tabular format (44 MB, 12/1/10)

Archived NetAffx Annotation Files

Mouse_Diversity_Array Annotations, CSV format, Release 29 (30 MB, 9/24/09)

MOUSEDIVm520650 Annotations, CSV format, Release 30 (35 MB, 11/17/09)

MOUSEDIVm520650 Annotations, CSV format, Release 31 (34 MB, 8/30/10)

MOUSEDIVm520650 Annotations, CSV format, Release 34.1 (34 MB, 4/18/14)

MOUSEDIVm520650 Annotations, SQLite Format, Release 31 (80 MB, 3/16/11)

MOUSEDIVm520650 Annotations, SQLite Format, Release 34.1 (58 MB, 4/18/14)

MOUSEDIVm520650 CN Annotations, CSV format, Release 30 (37 MB, 1/14/10)

MOUSEDIVm520650 CN Annotations, CSV format, Release 31 (34 MB, 8/30/10)

MOUSEDIVm520650 CN Annotations, CSV format, Release 34.1 (32 MB, 4/17/14)