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Mouse Gene 1.1 ST Array Plates - Support Materials

For more information, please see the product page.

Application Notes

Whole-transcript Expression Analysis (pdf, 557 kb)

Data Sheets

Mouse Gene 2.0 and 2.1 Arrays (pdf, 197 KB) – Japanese version

Mouse Gene 2.0 and 2.1 Arrays (pdf, 98 KB)

Library Files

AGCC 3.x MoGene-1_1-ST-V1 Library Files (zip, 338 KB)

GeneChip® Mouse Gene Array 1.1 TAC Configuration File (zip, 893 B)

GeneChip® Mouse Gene Array 2.1 TAC Configuration File (zip, 889 B)

Mouse Gene 1.1 ST Array Plate, Analysis (zip, 19 MB)

Mouse Gene 2.1 ST Array (zip, 21 MB)

Manuals

Expression Console™ Software (pdf, 6 MB)

GeneChip® High Throughput WT PLUS Kit (pdf, 10 MB)

GeneTitan® Instrument User Guide for Expression Array Plates (pdf, 10 MB)

Sample Attribute Editor (pdf, 597 KB)

SensationPlus™ FFPE Amplification and WT Labeling Kit (pdf, 391 KB)

Transcriptome Analysis Console (pdf, 7 MB)

WT Pico Kit User Guide (pdf, 1.8 MB)

WT PLUS Reagent Kit User Manual (pdf, 2 MB)

Package Inserts

6X Hybridization Module for WT Array Plates (pdf, 83 KB)

Gene ST Array Plate (pdf, 520 KB)

Quick Reference Cards

Array Plate Hybridization Cocktail Preparation Quick Reference Card (pdf, 271 KB)

Expression Console Quick Reference Card (pdf, 1.13 MB)

Sample Data

Human, Mouse and Rat Gene 1.1 ST Array Plate Tissue Sample Data (zip, 140 MB)

Mouse Gene 2.1 Sample Data (zip, 65 MB)

Additional Support

Fluidics Scripts

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

MoGene-2_1-st-v1 BED File (15 MB, 9/17/12)

Current NetAffx Annotation Files

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 36 (14 MB, 7/6/16)

MoGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 36 (14 MB, 7/6/16)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 36 (51 MB, 7/6/16)

MoGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 36 (50 MB, 7/6/16)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Design Time Annotation Files

MoGene-2_1-st-v1 Design Time Annotations, Full, GFF Format (47 MB, 8/9/12)

MoGene-2_1-st-v1 Design Time Annotations, Probeset, CSV Format (11 MB, 8/9/12)

Note: For gene level analysis you will need to download one of the probeset level annotation zip files (CSV) to get the meta-probeset lists. None of these files contain textual biological annotations such as gene name or GO annotations; textual biological information can be found in the NetAffx Transcript CSV file. The design time Probeset CSV file provides information about the probeset such as genome coordinate and supporting annotation types. This is a subset of information found in the NetAffx Probeset CSV file. The Probeset CSV file is also a subset of the Full GFF files which contain transcript cluster, exon cluster, probeset, and probe level annotations. The GFF files also contain information about the specific annotations supporting each of the probesets. For example, use the Full GFF files for pulling design time information into a local database. The Mappings TSV file contains mappings between other arrays and annotations.

Sequence Files

MoGene-2_1-st-v1 Probe Sequences, FASTA format (23 MB, 9/24/12)

MoGene-1_1-st-v1 Probe Sequences, FASTA format (26 MB, 11/23/09)

MoGene-2_1-st-v1 Probe Sequences, tabular format (19 MB, 9/24/12)

MoGene-1_1-st-v1 Probe Sequences, tabular format (21 MB, 11/23/09)

MoGene-2_1-st-v1 Transcript Cluster Sequences, FASTA format (25 MB, 9/24/12)

MoGene-1_1-st-v1 Transcript Cluster Sequences, FASTA format (19 MB, 11/23/09)

Archived NetAffx Annotation Files

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 29 (7.7 MB, 9/21/09)

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 30 (7.6 MB, 12/8/09)

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 30 (7.6 MB, 11/12/09)

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 31 (7.7 MB, 8/27/10)

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 32 (7.8 MB, 10/13/11)

MoGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 33 (9.3 MB, 11/15/12)

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 33.2 (8.1 MB, 3/27/13)

MoGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 33.2 (9.4 MB, 3/28/13)

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 34 (12 MB, 4/7/14)

MoGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 34 (13 MB, 4/7/14)

MoGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 35 (12 MB, 4/15/15)

MoGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 35 (11 MB, 4/15/15)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 29 (11 MB, 9/21/09)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 30 (11 MB, 12/8/09)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 30 (11 MB, 11/12/09)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 31 (12 MB, 8/27/10)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 32 (13 MB, 6/23/11)

MoGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 33 (20 MB, 11/15/12)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 33.1 (18 MB, 12/10/12)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (14 MB, 3/27/13)

MoGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (20 MB, 3/28/13)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 34 (38 MB, 4/7/14)

MoGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 34 (38 MB, 4/7/14)

MoGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 35 (40 MB, 4/15/15)

MoGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 35 (33 MB, 4/15/15)