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Human Mapping 500K Array Set - Support Materials

For more information, please see the product page.

Application Notes

Microarrays in Cancer Research (pdf, 423 KB)

Data Sheets

Human Mapping 500K Array Set (pdf, 192 KB)

Frequently Asked Questions

Human Mapping 500K Array Set

Library Files

Mapping 250K Nsp Array (zip, 43 MB)

Mapping 250K Sty Array (zip, 42 MB)

Manuals

Mapping 500K Assay Manual (pdf, 3.4 MB)

Material Safety Data Sheets

Mapping 500K Array Set, Nsp Array (zip, 303 KB)

Mapping 500K Array Set, Sty Array (zip, 345 KB)

Package Inserts

Mapping 500K Array Set (pdf, 97 KB)

Mapping 500K Assay Kit (pdf, 83 KB)

Quick Reference Cards

Mapping 500K Array Set (zip, .99 MB)

Sample Data

Mapping 500K HapMap Genotype Data Set

Mapping 500K Sample Data Set

White Papers

BRLMM Algorithm for Affymetrix Mapping Arrays (pdf, 278 KB)

Additional Support

Fluidics Scripts

Mapping 500K Nsp Reference DNA Concordance (zip, 3.5 MB)

Mapping 500K Nsp Reference Genotype Calls (zip, 671 KB)

Mapping 500K Sty Reference DNA Concordance (zip, 3.5 MB)

Mapping 500K Sty Reference Genotype Calls (zip, 612 KB)

Probe Set Data in MAGE-ML Format

Alignment, Annotation, and Sequence files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

Mapping250K_Nsp BED File (3.9 MB, 11/28/07)

Mapping250K_Sty BED File (3.6 MB, 11/28/07)

Current NetAffx Annotation Files

Mapping250K_Nsp Annotations, CSV format, Release 32 (83 MB, 7/15/11)

Mapping250K_Sty Annotations, CSV format, Release 32 (76 MB, 7/15/11)

Mapping250K_Nsp Annotations, GTYPE Format, Release 21 (50 MB, 1/2/07)

Mapping250K_Sty Annotations, GTYPE Format, Release 21 (46 MB, 1/2/07)

Annotations, SQLite Format, Release 32 (204 MB, 6/24/11)

Note: NetAffx Annotation Files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probesets of interest. Annotation CSV files for the exon arrays are split into a probeset level annotation file and a transcript cluster level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

Mapping250K_Nsp Flanking Sequences, FASTA (3.5 MB, 8/20/08)

Mapping250K_Sty Flanking Sequences, FASTA (3.2 MB, 8/20/08)

Mapping250K_Nsp Probe Sequences, Tabular (34 MB, 8/20/08)

Mapping250K_Sty Probe Sequences, Tabular (34 MB, 8/20/08)

Archived NetAffx Annotation Files

Mapping250K_Nsp Annotations, CSV format, Release 21 (77 MB, 1/29/07)

Mapping250K_Sty Annotations, CSV format, Release 21 (71 MB, 1/29/07)

Mapping250K_Nsp Annotations, CSV format, Release 22 (80 MB, 3/9/07)

Mapping250K_Sty Annotations, CSV format, Release 22 (73 MB, 3/9/07)

Mapping250K_Nsp Annotations, CSV format, Release 23 (82 MB, 7/12/07)

Mapping250K_Sty Annotations, CSV format, Release 23 (76 MB, 7/12/07)

Mapping250K_Nsp Annotations, CSV format, Release 24 (73 MB, 11/28/07)

Mapping250K_Sty Annotations, CSV format, Release 24 (67 MB, 11/28/07)

Mapping250K_Nsp Annotations, CSV format, Release 25 (86 MB, 4/7/08)

Mapping250K_Sty Annotations, CSV format, Release 25 (79 MB, 4/7/08)

Mapping250K_Nsp Annotations, CSV format, Release 26 (87 MB, 7/9/08)

Mapping250K_Sty Annotations, CSV format, Release 26 (81 MB, 7/9/08)

Mapping250K_Nsp Annotations, CSV format, Release 27 (79 MB, 11/25/08)

Mapping250K_Sty Annotations, CSV format, Release 27 (73 MB, 11/25/08)

Mapping250K_Nsp Annotations, CSV format, Release 28 (80 MB, 3/6/09)

Mapping250K_Sty Annotations, CSV format, Release 28 (74 MB, 3/6/09)

Mapping250K_Nsp Annotations, CSV format, Release 29 (70 MB, 7/8/09)

Mapping250K_Sty Annotations, CSV format, Release 29 (64 MB, 7/8/09)

Mapping250K_Nsp Annotations, CSV format, Release 30 (80 MB, 11/15/09)

Mapping250K_Sty Annotations, CSV format, Release 30 (73 MB, 11/15/09)

Mapping250K_Nsp Annotations, CSV format, Release 31 (83 MB, 10/26/10)

Mapping250K_Sty Annotations, CSV format, Release 31 (76 MB, 10/26/10)

Mapping250K_Nsp Annotations, CSV, Release 20 (79 MB, 6/15/06)

Mapping250K_Sty Annotations, CSV, Release 20 (72 MB, 6/15/06)

Mapping250K_Nsp Annotations, GTYPE, Release 20 (53 MB, 3/9/06)

Mapping250K_Sty Annotations, GTYPE, Release 20 (48 MB, 3/9/06)

Annotations, SQLite Format, Release 24 (179 MB, 10/13/09)

Annotations, SQLite Format, Release 25 (208 MB, 10/13/09)

Annotations, SQLite Format, Release 26 (212 MB, 10/13/09)

Annotations, SQLite Format, Release 27 (200 MB, 10/13/09)

Annotations, SQLite Format, Release 28 (201 MB, 10/13/09)

Annotations, SQLite Format, Release 29 (176 MB, 10/13/09)

Annotations, SQLite Format, Release 30 (197 MB, 11/15/09)

Annotations, SQLite Format, Release 31 (199 MB, 8/30/10)

Browser Annotation File, Release 28 (20 MB, 5/4/09)

Browser Annotation File, Release 31 (23 MB, 12/14/10)

Browser Annotation File, Release 32 (25 MB, 6/15/11)