Data Resource Center
Exon 1.0 ST Array Expression Data Sets
Sample data generated using the single strand amplified whole transcript protocol.
Exon 1.0 ST Array Sample Data from the Human, Mouse and Rat Exon 1.0 ST Arrays, including:
- Tissue panel data sets on all three arrays
- Tissue mixture data set on both the Human Exon 1.0 ST Array and the HG-U133 Plus 2.0 Array
- Small colon cancer data set on the Human Exon 1.0 ST Array
Gene 1.0 ST Array Sample Data Sets
Gene 1.0 ST Array Sample Data from the Human, Mouse and Rat Gene 1.0 ST Arrays, including:
- Tissue panel data sets on all three arrays
- Tissue mixture data set on the Human Gene 1.0 ST Array, the Human Exon 1.0 ST Array and the HG-U133 Plus 2.0 Array
Genotyping Mapping Data Sets
Genome-Wide Human SNP Array 6.0 Sample Data Set
Genome-Wide Human SNP Array 5.0 Sample Data Set
Genotype and Allele Frequency Data
Mapping 500K HapMap Genotype Data Set
Mapping 100K HapMap Trio Dataset
Chromosome Analysis Suite (ChAS) Sample Data
Five cytogenetic samples are available for analysis in Chromosome Analysis Suite. This sample data includes cases of deletions, consanguinity, mosaicism, and loss of heterozygosity (LOH).
CNAT Reference Data Sets
The Copy Number Analysis Tool (CNAT) Reference Data Set is designed to provide the full reference data used in development of the 10K and 100K CNAT 3.0 Reference Set.
Copy Number Analysis Data Sets
A collection of Copy Number Analysis Sample Data using both the Affymetrix Human Mapping 100K and 500K arrays to produce estimates of genomic copy number.
Cytogenetics Sample Data on SNP Array 6.0
Ten cytogenetic samples are available for analysis in Genotyping Console™ Software. This cytogenetics sample data represent cases from Angelman/Prader-Willi, Smith-Magenis, Trisomy13 and many more syndromes.
Tiling Arrays For Regulation & Transcript Mapping
These Tiling Array Sample Data sets leverage various Tiling Arrays with the CHiP-on-chip assay to identify genomic binding locations of DNA binding proteins of interest.
3' Expression Data Sets
High Throughput Plate Data
Zipped GCO EXP/CEL files used in performance whitepaper.
3' Expression Sample Data
Zipped files with sample GeneChip probe array data (.exp, .dat, .cel., .dat, .rpt, files) for a variety of expression and genotyping arrays.
Latin Square Data
Zipped collection of files of 3' Expression Data from Human U95 and U133 array containing spikes at known concentrations for the purpose of algorithm development.
Human Tiling 1.0 & Human U133 Expression Data
Data is from: Carroll J. S., et al. Genome-wide Analysis of Estrogen Receptor Binding Sites. Nature Genetics38(11):1289-97 (2006).
Affymetrix thanks the laboratories of Shirley Liu and Myles Brown for permission to redistribute these data.
Data is hosted on the Affymetrix Secure File Exchange (FTP) due to its size. For access to this data set, please email webmaster@affymetrix.com.
Resequencing Data
This dataset contains 14 Mitov2 array .cel files generated from the Human Mitochondrial Resequencing Array 2.0. The probe array files represent 3 sets of CEPH trios including 2 sets of technical replicates and 2 human mito standard samples.
Human Mitochondrial Resequencing Array 2.0 (zip, 25.4 MB) >