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GeneChip® Human Transcriptome Array 2.0 Data Sets

The sample HTA 2.0 array data set includes four replicates of two tissue types (liver and muscle).

Exon 1.0 ST Array Expression Data Sets

Sample data generated using the single strand amplified whole transcript protocol.

Exon 1.0 ST Array Sample Data from the Human, Mouse and Rat Exon 1.0 ST Arrays, including:

  • Tissue panel data sets on all three arrays
  • Tissue mixture data set on both the Human Exon 1.0 ST Array and the HG-U133 Plus 2.0 Array
  • Small colon cancer data set on the Human Exon 1.0 ST Array

Gene 1.0 ST Array Sample Data Sets

Gene 1.0 ST Array Sample Data from the Human, Mouse and Rat Gene 1.0 ST Arrays, including:

  • Tissue panel data sets on all three arrays
  • Tissue mixture data set on the Human Gene 1.0 ST Array, the Human Exon 1.0 ST Array and HG-U133 Plus 2.0 Array

Gene 1.1 ST Array Strip Sample Data Sets

Sample data generated using the Affymetrix® Human Gene 1.1 ST Array Strips processed on the GeneAtlas™ system. The sample data set includes three replicates of four different tissue types (heart, brain, prostate and testes). Download Gene 1.1 ST Array Strip Sample Data Sets >

 

Genotyping Mapping Data Sets

Genome-Wide Human SNP Array 5.0 Sample Data Set

Genotype and Allele Frequency Data

Mapping 500K HapMap Genotype Data Set

Mapping 500K Sample Data Set

Mapping 100K HapMap Trio Dataset

Mapping 10K Sample Data

Axiom® Exome Sample Data Set

The Axiom® Exome Sample Data Set includes CEL files and observed genotypes for 1,249 individuals. These data are useful as reference data for GWAS or for ancestry determination, and a variety of other applications. Additional information about the Axiom® Exome array can be found on the related product page. Download the sample data set >

Axiom™ Genomic Database Sample Data

With the Axiom™ Genomic Database of validated SNPs, researchers can create custom arrays or array plates containing tens of thousands or several million SNPs. This broad spectrum of custom capabilities enables highly precise designs leveraging Affymetrix' Genomic Database of validated SNPs, including millions of variants from the 1000 Genomes Project as well as SNPs with low minor allele frequencies. Download the sample data set >

DMET Plus Sample Data Set

The DMET Plus Sample Data Set is a useful tool for software and workflow demonstrations, development of probe-level analysis methods for making genotype calls from probe intensity data, and a variety of other applications.

The data set consists of eight distinct HapMap CEPH samples, three other genomic samples, and three synthetic plasmid samples. One CEPH sample is replicated two times.

CNAT Reference Data Sets

The Copy Number Analysis Tool (CNAT) Reference Data Set is designed to provide the full reference data used in development of the 10K and 100K CNAT 3.0 Reference Set.

Copy Number Analysis Data Sets

A collection of Copy Number Analysis Sample Data using both the Affymetrix Human Mapping 100K and 500K arrays to produce estimates of genomic copy number.

Cytogenetics Sample Data on SNP Array 6.0

Ten cytogenetic samples are available for analysis in Genotyping Console™ Software. This cytogenetics sample data represent cases from Angelman/Prader-Willi, Smith-Magenis, Trisomy13 and many more syndromes.

Tiling Arrays For Regulation & Transcript Mapping

These Tiling Array Sample Data sets leverage various Tiling Arrays with the CHiP-on-chip assay to identify genomic binding locations of DNA binding proteins of interest.

3' Expression Data Sets

High Throughput Plate Data
Zipped GCO EXP/CEL files used in performance whitepaper.

3' Expression Sample Data
Zipped files with sample GeneChip probe array data (.exp, .dat, .cel., .dat, .rpt, files) for a variety of expression and genotyping arrays.

Latin Square Data
Zipped collection of files of 3' Expression Data from Human U95 and U133 array containing spikes at known concentrations for the purpose of algorithm development.

3' Expression GeneAtlas Array Strip Data Sets

HG-U219 Array Strip sample data set
Zipped file of CEL and sample attribute files from Human Genome U219 Array Strips.

Human Tiling 1.0 & Human U133 Expression Data

Data is from: Carroll J. S., et al. Genome-wide Analysis of Estrogen Receptor Binding Sites. Nature Genetics38(11):1289-97 (2006).

Affymetrix thanks the laboratories of Shirley Liu and Myles Brown for permission to redistribute these data.

Data is hosted on the Affymetrix Secure File Exchange (FTP) due to its size. For access to this data set, please email webmaster@affymetrix.com.

Resequencing Data

This dataset contains 14 Mitov2 array .cel files generated from the Human Mitochondrial Resequencing Array 2.0. The probe array files represent 3 sets of CEPH trios including 2 sets of technical replicates and 2 human mito standard samples.

Human Mitochondrial Resequencing Array 2.0 (zip, 25.4 MB) >