| Data source |
Mol Type |
Release Date |
Version |
Species |
Description |
Notes |
| GenBank |
mRNA, peptide |
15-Oct-06 |
156 |
All |
full and partial mRNA records, CDS translations, and mRNA/peptide derived from organellar DNA. NR clustered (*) |
|
| RefSeq |
mRNA, peptide |
05-Nov-06 |
20 |
All |
mRNA records, CDS translations
and mRNA/peptide derived from organellar DNA. NR clustered (*) |
|
| UniProt |
protein |
12-Dec-06 |
9.3 |
All |
Protein sequence data
from both Swiss-Prot 51.3 and TrEMBL 34.4 |
|
| Entrez Gene |
mRNA |
4-Jan-07 |
|
All |
Gene information database derived from
RefSeq, model organism databases, and other NCBI databases |
|
| Ensembl |
mRNA, peptide |
Dec-06 |
42 |
Anopheles gambiae |
cDNA and peptide
sequence including non-hypothetical, ab initio and
EST-based transcripts |
For
D. melanogaster and S. cerevisiae, we use predicted transcripts from Ensembl
and other annotated transcripts from Flybase and SGD, respectively |
| Bos
taurus |
| Caenorhabditis elegans |
| Canis
familiaris |
| Danio rerio |
| Drosophila melanogaster |
| Gallus gallus |
| Homo sapiens |
| Mus musculus |
| Rattus norvegicus |
| Saccharomyces cerevisiae |
| Xenopus tropicalis |
| UniGene |
mRNA |
13-Jun-06 |
33 |
Anopheles gambiae |
EST-based non-redundant gene-oriented clusters |
|
| 29-Oct-06 |
55 |
Arabidopsis thaliana |
| 29-Nov-06 |
81 |
Bos taurus |
| 09-Nov-06 |
32 |
Caenorhabditis elegans |
| 16-Jul-06 |
16 |
Canis familiaris |
| 12-Jul-06 |
6 |
Citrus sinensis |
| 13-Nov-06 |
98 |
Danio rerio |
| 24-Oct-06 |
46 |
Drosophila melanogaster |
| 25-Jan-07 |
32 |
Gallus gallus |
| 12-Oct-05 |
26 |
Glycine max |
| 26-Nov-06 |
198 |
Homo sapiens |
| 06-Nov-06 |
48 |
Hordeum vulgare |
| 12-Nov-06 |
26 |
Lycopersicon esculentum
|
| 03-Aug-06 |
5 |
Macaca mulatta |
| 07-Aug-06 |
25 |
Medicago truncatula |
| 23-Nov-06 |
160 |
Mus musculus |
| 18-Jan-07 |
65 |
Oryza sativa |
| 27-May-05 |
1 |
Populus balsamifera |
| 01-Dec-05 |
10 |
Populus tremula x Populus tremuloides |
| 03-Jul-06 |
1 |
Populus trichocarpa |
| 29-Nov-06 |
159 |
Rattus norvegicus |
| 13-Sep-06 |
8 |
Saccharum officinarum |
| 31-Oct-06 |
27 |
Solanum tuberosum |
| 22-Oct-06 |
27 |
Sus scrofa |
| 31-Jul-06 |
46 |
Triticum aestivum |
| 26-Jul-06 |
19 |
Vitis vinifera |
| 13-Nov-06 |
72 |
Xenopus laevis |
| 07-Nov-06 |
34 |
Xenopus tropicalis |
| 18-Jan-07 |
61 |
Zea mays |
| UCSC |
DNA |
Feb-03 |
anoGam1 |
Anopheles
gambiae |
Nuclear and mitochondrial genome assemblies |
|
| May-05 |
bosTau2 |
Bos taurus |
| Mar-04 |
ce2 |
Caenorhabditis elegans |
| May-05 |
canFam2 |
Canis familiaris |
| Mar-06 |
danRer4 |
Danio rerio |
| Mar-06 |
hg18 |
Homo sapiens |
| Mar-06 |
mm8 |
Mus musculus |
| May-06 |
galGal3 |
Gallus gallus |
| Jan-06 |
rheMac2 |
Macaca mulatta |
| Nov-04 |
rn4 |
Rattus norvegicus |
| Oct-03 |
sacCer1 |
Saccharomyces cerevisiae |
| RefSeq |
Mitochondrial DNA, mRNA, peptide |
Oct-05 |
|
Arabidopsis thaliana |
Organellar genome assembly |
Gene, CDS, and peptide sequences were extracted from
the RefSeq genome records. |
| Nov-05 |
|
Oryza sativa |
| Chloroplast DNA, mRNA, peptide |
Oct-05 |
|
Arabidopsis thaliana |
| Nov-05 |
|
Oryza sativa |
| Sanger |
DNA |
4-Jul-05 |
|
Schizosaccharomyces pombe |
Nuclear genome assembly |
|
| mRNA, peptide |
17-May-06 |
|
Schizosaccharomyces pombe |
All ORF CDS |
| SGD |
mRNA, peptide |
12-May-06 |
|
Saccharomyces cerevisiae |
All ORF CDS |
|
| TIGR |
DNA |
13-May-04 |
|
Arabidopsis thaliana |
Nuclear genome assembly |
|
| mRNA |
6-Oct-05 |
|
Medicago truncatula |
Predicted CDS sequences from IMGAG |
|
| DNA |
12-Jan-06 |
4 |
Oryza sativa |
Rice pseudomolecules - nuclear
genome assembly |
|
| mRNA |
12-Jan-06 |
4 |
Oryza sativa |
Rice pseudomolecules -
transcripts |
|
| DNA |
1-Aug-04 |
pfa1 |
Plasmodium falciparum |
Nuclear genome assembly |
|
| mRNA |
1-Aug-04 |
pfa1 |
Plasmodium falciparum |
cDNA sequences |
|
| BGI_RIS |
mRNA |
1-Aug-04 |
|
Oryza sativa |
Fgene-based
predictions (Syngenta) |
|
| miRBase |
miRNA |
Sep-06 |
9.0 |
Homo sapiens |
Precursor miRNA stem-loop sequences |
Used only for annotating exon arrays. |
| Mus
musculus |
| Rattus
norvegicus |
| JGI |
DNA |
Jun-04 |
1.0 |
Populus
trichocarpa |
Nuclear genome
assembly, 7.5x coverage |
|
| mRNA |
13-Sep-06 |
1.1 |
Populus
trichocarpa |
Transcripts from predicted gene models |
| FlyBase |
DNA |
08-Dec-06 |
5.1 |
Drosophila melanogaster |
Nuclear genome assembly |
|
| mRNA, peptide |
08-Dec-06 |
5.1 |
Drosophila melanogaster |
Genome sequence
annotations |
| PseudoCAP |
mRNA, peptide |
12-Jul-06 |
|
Pseudomonas aeruginosa |
Pseudomonas community annotation project |
Release date is the date downloaded |
