Release notes for NetAffx Release #20, July 2006

This table lists the Data sources used for NetAffx Annotation Release 20, including the Version number, if there is one, and the date of the release. Data sources that cover multiple species are listed first, followed by more species-specific sources.

Data source	Mol Type	Release Date	Version	Species	Description	Notes
GenBank	mRNA, peptide	15-Apr-06	153	All	full and partial mRNA records, CDS translations, and mRNA/peptide derived from organellar DNA. NR clustered (*)
RefSeq	mRNA, peptide	1-May-06	17	All	mRNA records, CDS translations and mRNA/peptide derived from organellar DNA. NR clustered (*)
UniProt	protein	13-Jun-06	8.1	All	UniProt 8.1 consists of Swiss-Prot 50.1 and TrEMBL 33.1
Entrez Gene	mRNA	8-Jun-06		All
Ensembl	mRNA, peptide	Apr-06	38	Anopheles gambiae	cDNA sequence include both non-hypothetical and ab initio transcripts and EST-based transcripts for most of these organisms.	For D. melanogaster and S. cerevisiae, we use predicted transcripts from Ensembl and other annotated transcripts from Flybase and SGD, respectively
				Bos taurus
				Caenorhabditis elegans
				Canis familiaris
				Danio rerio
				Drosophila melanogaster
				Gallus gallus
				Homo sapiens
				Mus musculus
				Rattus norvegicus
				Saccharomyces cerevisiae
				Xenopus tropicalis
UniGene	mRNA	17-Sep-05	31	Anopheles gambiae
		21-May-06	53	Arabidopsis thaliana
		2-May-06	77	Bos taurus
		26-May-06	27	Caenorhabditis elegans
		1-May-06	14	Canis familiaris
		7-Sep-05	5	Citrus sinensis
		10-Mar-06	90	Danio rerio
		30-May-06	43	Drosophila melanogaster
		12-Dec-05	29	Gallus gallus
		14-Feb-05	22	Glycine max
		7-May-06	191	Homo sapiens
		4-May-06	44	Hordeum vulgare
		2-Oct-05	24	Lycopersicon esculentum
		9-Dec-05	4	Macaca mulatta
		24-May-06	24	Medicago truncatula
		27-Apr-06	153	Mus musculus
		13-May-06	61	Oryza sativa
		27-May-05	1	Populus balsamifera
		1-Dec-05	8	Populus tremula x Populus tre muloides
		29-Apr-06	152	Rattus norvegicus
		25-Dec-04	6	Saccharum officinarum
		10-Jan-06	24	Solanum tuberosum
		4-May-06	39	Sus scrofa
		9-Aug-05	44	Triticum aestivum
		6-Apr-06	18	Vitis vinifera
		23-Apr-06	67	Xenopus laevis
		13-Oct-05	28	Xenopus tropicalis
		11-May-06	54	Zea mays
UCSC	DNA	Feb-03	anoGam1	Anopheles gambiae	Nuclear and mitochondrial genome assemblies
		May-05	bosTau2	Bos taurus
		Mar-04	ce2	Caenorhabditis elegans
		May-05	canFam2	Canis familiaris
		Apr-04	dm2	Drosophila melanogaster
		Feb-04	mm8	Mus musculus
		Mar-06	galGal2	Gallus gallus
		Jun-03	rn3	Rattus norvegicus
		Oct-03	sacCer1	Saccharomyces cerevisiae
GenBank	DNA, mitochondrial	Oct-05		Arabidopsis thaliana	Organellar genome sequence
		Nov-05		Oryza sativa
	DNA, chloroplast	Oct-05		Arabidopsis thaliana
		Nov-05		Oryza sativa
Sanger	DNA	4-Nov-04	Zv4	Danio rerio	Nuclear genome assembly
	DNA	4-Jul-05		Schizosaccharomyces pombe	Nuclear genome assembly
	mRNA, peptide	17-May-06		Schizosaccharomyces pombe	All ORF CDS
SGD	mRNA, peptide	12-May-06		Saccharomyces cerevisiae	All ORF CDS
TIGR	DNA	13-May-04		Arabidopsis thaliana	Nuclear genome assembly
	mRNA	6-Oct-05		Medicago truncatula	Predicted CDS sequences from? IMGAG.
	DNA	Dec-04	3	Oryza sativa	Rice pseudomolecules - nuclear genome assembly
	mRNA	12-Jan-06	4	Oryza sativa	Rice pseudomolecules - transcripts
	DNA	1-Aug-04	pfa1	Plasmodium falciparum	Nuclear genome assembly
	mRNA	1-Aug-04	pfa1	Plasmodium falciparum	cDNA sequences
BIS_RIS	mRNA	1-Aug-04		Oryza sativa	Fgene-based predictions (Syngenta)
miRBase	miRNA	May-06	8.1	Homo sapiens	Precursor miRNA stem-loop sequences	Used only for exon arrays.
				Mus musculus
				Rattus norvegicus
JGI	DNA	Jun-04	1.0	Populus trichocarpa	Nuclear genome assembly, 7.5x coverage
	mRNA	13-Feb-06	1.0	Populus trichocarpa	Transcripts from predicted gene models
FlyBase	mRNA, peptide	21-Feb-06	4.3	Drosophila melanogaster	Genome sequence annotations
PseudoCAP	mRNA, peptide	12-May-05		Pseudomonas aeruginosa		Release date is the date downloaded