How does the Mapping 100K Set data quality compare with HapMap data?
- ~20,000 SNPs on the Mapping 100K Set were in HapMap Release 8
- 90 individuals (30 trios) genotyped to give ~2 million genotype comparisons
- Data completeness: 99.66%
- Genotype Concordance: 99.78%.
- For discordant genotypes, it is unknown whether the genotyping error is
made by the Mapping 100K Set or the other technology.