search help All Topics GeneChip® Arrays NetAffx™ Analysis Center Assays and Reagents Instruments Software

• System Requirements
• Installation
• File, Array and Sample Types Supported
• Backwards Compatibility
• QC for Genotyping
• Genotyping
• QC for Copy Number Analysis
• Copy Number Analysis
• Reference Sets
• Copy Number Polymorphism Analysis
• GTC Browser
• Heat Map Viewer

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QC for Genotyping

Frequently Asked Questions

1. Which QC methods for genotyping analysis are available in GTC 3.0.1?

2. What is the Contrast QC metric for the SNP Array 6.0?

3. What is the threshold for the Contrast QC metric for the SNP Array 6.0?

4. What are the thresholds for the QC Call Rate metric?

5. Can QC thresholds be modified in GTC 3.0.1?