search help All Topics GeneChip® Arrays NetAffx™ Analysis Center Assays and Reagents Instruments Software

• System Requirements
• Installation
• File, Array and Sample Types Supported
• Backwards Compatibility
• QC for Genotyping
• Genotyping
• QC for Copy Number Analysis
• Copy Number Analysis
• Reference Sets
• Copy Number Polymorphism Analysis
• GTC Browser
• Heat Map Viewer

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File, Array and Sample Types Supported

Frequently Asked Questions

1. Does GTC 3.0.1 support CEL files from Affymetrix® GeneChip® Command Console® (AGCC) and GeneChip® Operating System (GCOS)?

2. Which Affymetrix probe array types are supported in GTC 3.0.1?

3. Can GTC 3.0.1 be used to analyze copy number for cancer studies?