Affymetrix GeneChip® Genotyping Analysis Software (GTYPE) is part of the GeneChip Mapping Array System, specifically designed to give highly accurate, automated SNP allele calls for the GeneChip Mapping Arrays. In addition, GTYPE was developed to enable workflows for a variety of SNP mapping applications. For additional information:

http://www.affymetrix.com/products/software/specific/gtype.affx

Affymetrix GeneChip® Sequence Analysis Software (GSEQ) was specifically designed to give high-quality base calling and streamlined data analysis. GSEQ enables scientists to perform comparative sequencing by providing high-quality sequence information and automatic detection of SNP sites in a single analysis package. For additional information:

http://www.affymetrix.com/products/software/specific/gseq.affx

Affymetrix GeneChip® Targeted Genotyping Analysis Software (GTGS) is part of the GeneChip Targeted Genotyping System. GTGS is specifically designed to give highly accurate, automated SNP allele calls for the Targeted Genotyping MIP assay, available for both application-specific fixed assays and custom SNP assays. For additional information:

http://www.affymetrix.com/products/software/specific/gtgs.affx