GeneChip® Command Console® Software

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Are there any software packages that are not compatible with Command Console Software?

Affymetrix software applications have been updated to work with Command Console Software, including Expression Console Software, Genotyping Console Software, DMET Console Software, Targeted Genotyping Analysis Software (GTGS), Sequence Analysis Software (GSEQ), and Tiling Analysis Software (TAS). Some legacy tools do not work with Command Console files and require conversion back to GCOS file formats, such as the Copy Number Analysis Tool (CNAT).

Note: No other web servers can be installed on the Command Console workstation. Other web servers will conflict with the Command Console web server.