The following table outlines the parsing support provided by each of the Affymetrix SDK's.
| File Type |
|
|
|
|
|
|
| BAR |
X
|
X
|
-
|
X
|
X
|
-
|
| BPMAP |
X
|
X
|
-
|
X
|
X
|
-
|
| CDF |
X
|
X
|
X
|
X
|
X
|
X
|
| CEL |
X
|
X
|
X
|
X
|
X
|
X
|
| CHP (expression) |
X
|
X
|
X
|
X
|
X
|
X
|
| CHP (genotyping) |
X
|
X
|
X
|
X
|
X
|
X
|
| CHP (resequencing) |
X1
|
X1
|
X1
|
X
|
X
|
X
|
| CNCHP |
-
|
-
|
-
|
-
|
X
|
X
|
| CNVCHP |
-
|
-
|
-
|
-
|
X
|
X
|
| DAT |
X2
|
X2
|
X2
|
X
|
-
|
-
|
| DTT Array |
-
|
-
|
-
|
X
|
X
|
-
|
| Calvin Array |
-
|
-
|
-
|
-
|
X
|
X
|
| EXP |
X
|
X
|
X
|
X
|
X
|
-
|
| GRC |
-
|
-
|
-
|
X
|
X
|
-
|
| LOHCHP |
-
|
-
|
-
|
-
|
X
|
X
|
| MSK |
-
|
-
|
-
|
X
|
X
|
-
|
| PSI |
-
|
-
|
-
|
X
|
X
|
X
|
1) GDAS 3.1 EA resequencing CHP files not supported.
2) Not able to parse files larger than ~700MB.
