Affymetrix - Tiling Array Tools

TILING ARRAY TOOLS

Integrated Genome Browser - Download | Docs

Tiling Analysis Software - Version 1.1, Build 2, 5/10/2006 - Download | Manual

Version 1.1 includes the following changes:

Option to write either CHP or BAR file. Specify option in the Export tab of the Default Properties dialog.
Added the scaling target intensity to the file properties function.
Enrichment analysis. This analysis performs a simulation to assess the likelihood that the observed overlap is different from the expected overlap with no enrichment.
Interval overlap report. This report provides the number of intervals and bases from a BED file that are within a user-specified distance of intervals from a reference BED file.
PM only analysis of PM/MM arrays.

Tiling Analysis Software (TAS) Support Policy
TAS is an Affymetrix Tool and supported according to the Affymetrix Tools Support Policy.

Probe Coordinate Convention
This page documents the convention regarding probe and interval coordinates produced by the TAS software.

Tiling Analysis Software - Version 1, Build 15, 12/23/2005 - Download

GeneChip Tiling Analysis SDK - Download

	BPMAP Probe Exporter (Updated 1/31/06) - Download
	The 1/31/06 update includes the group and version as part of the sequence name.

LIBRARY FILES

	Chr21-22, chips A, B, C [NCBIv28 GTRANS Libraries] - Download
	These BPMAP files are required by the GTRANS software for the analysis of the Chromosome 21/22 Tiling Arrays. These files use version 28 of the NCBI assembly of the Human Genome draft.

	Chr21-22, chips A, B, C [NCBIv30 GTRANS Libraries] - Download
	These BPMAP files are required by the GTRANS software for the analysis of the Chromosome 21/22 Tiling Arrays. These files use version 30 of the NCBI assembly of the Human Genome draft.

	Chr21-22, chips A, B, C [NCBIv33 GTRANS Libraries] - Download
	These BPMAP files are required by the GTRANS software for the analysis of the Chromosome 21/22 Tiling Arrays. These files use version 33 of the NCBI assembly of the Human Genome draft.

	GCOS Chromosome 21/22 Library Files - Download
	These are the library files required for scanning the Chromosome 21 and 22 arrays within the GCOS software. This archive also includes BPMAP files listed above.

	Encode-CHIP01[Controls] - Download
	These BPMAP files are required by the GTRANS software for the analysis of Encode Arrays.

	Encode-CHIP01 [NCBIv33 GTRANS Libraries] - Download
	These BPMAP files are required by the GTRANS software for the analysis of Encode Arrays. These files use version 33 of the NCBI assembly of the Human Genome draft.

	Encode-CHIP01 [NCBIv34 GTRANS Libraries] - Download
	These BPMAP files are required by the GTRANS software for the analysis of Encode Arrays. These files use version 34 of the NCBI assembly of the Human Genome draft.

	Encode-CHIP01 [NCBIv35 GTRANS Libraries] - Download
	These BPMAP files are required by the GTRANS software for the analysis of Encode Arrays. These files use version 35 of the NCBI assembly of the Human Genome draft.

	GCOS Encode-CHIP01 Library Files - Download
	These are the library files required for scanning the Encode-CHIP01 arrays within the GCOS software.