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Learning Center, Train on Affymetrix Tools and Instruments Learning Center Overview
Learning Center, Command Console Software Series Command Console®
Learning Center, Newark NJ - Data Analysis Workshops Data Analysis Workshops
Learning Center, Genotyping Console Software Series Genotyping Console®
Learning Center, Genotyping Console Software Series NetAffx® Learning Center
Learning Center, GTYPE 4.1 Software Overview Mapping 500k Assay
Learning Center, GTYPE 4.1 Software Overview WT Assay Tutorial
Tiling Analysis Software Tutorial Tiling Analysis Software Tutorial
Learning Center, Expression Data Analysis Series Expression Data
Analysis Series
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Application Downloads

The following applications are available for software development purposes and integration testing only.

APPLICATIONS
Command Console® (AGCC) Software 1.1
Affymetrix® GeneChip® Command Console® Software (AGCC) is the latest generation of instrument control software for GeneChip® systems.
GCOS 1.4
Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. The download code is 690031-20223.
GSEQ
Affymetrix GeneChip® Sequence Analysis Software (GSEQ) enables high-quality base calling and streamlined data analysis supporting the variety of Affymetrix Resequencing Arrays.
Genotyping Console
Affymetrix® Genotyping Console™ is a new genotyping analysis software package designed to streamline whole-genome genotyping analysis and quality control for the Genome-Wide SNP Arrays 5.0 and 6.0.
Expression Console
Expression Console™ software supports probe set summarization and CHP file generation for both 3' expression (e.g., Human Genome U133 Plus 2.0 Array) and exon arrays (e.g., Human Exon 1.0 ST Array). The Expression Console workflow provides the user with a choice of the more commonly used probe set summarization algorithms.
TAS
The Affymetrix® Tiling Analysis Software enables analysis of GeneChip® Tiling Arrays, a new tool to discover novel RNA transcripts or map sites of protein-DNA interaction.
SUPPORT POLICY

Please read the support policy for these development versions of Affymetrix applications. Details here.

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