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OncoScan™ Console 1.0 Software

OncoScan™ Console 1.0 Software provides quality control (QC) and data summaries for OncoScan™ FFPE Assay Kit.

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Manuals

OncoScan® ASM v 1.1 User Guide for GCS3000Dx2 (pdf, 1.42 MB)

OncoScan® Assay User Guide (pdf, 9 MB)

OncoScan® CNV ASM v1.1 User Guide for GCS3000Dx2 (pdf, 707 KB)

OncoScan® Console 1.3 User Guide (pdf, 5.2 MB)

OncoScan® Nexus Express Software Manual (pdf, 9.16 MB)

OncoScan® Site Preparation Guide (pdf, 250 KB)

Somatic Mutation Viewer User Manual – V.1.0 (pdf, 837 KB)

Quick Reference Cards

OncoScan® 13 sample Quick Reference Card (pdf, 881 KB)

OncoScan® 25 sample Quick Reference Card (pdf, 882 KB)

OncoScan® 7 sample Quick Reference Card (pdf, 881 KB)

OncoScan® 9 sample Quick Reference Card (pdf, 883 KB)

OncoScan® Nexus Express Software Quick Reference Card (pdf, 3 MB)

Sample Data

OncoScan® FFPE Assay Kit Sample Data (zip, 78 MB)

OncoScan® FFPE Assay Kit Sample Data Presentation (pdf, 1.31 MB)

Library Files

AGCC OncoScan® Library Files

OncoScan Console 1.3 Library Files version NA33.1 for OncoScan®

OncoScan Console 1.3 Library Files version NA33.1 for OncoScan® CNV

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

OncoScan BED File (2.3 MB, 2/24/14)

Current NetAffx Annotation Files

OncoScan Annotations, CSV format, Release 33 (59 MB, 10/2/13)

OncoScan_CNV Annotations, CSV format, Release 33 (59 MB, 5/22/15)

OncoScan Annotations, SQLite Format, Release 33 (78 MB, 10/2/13)

OncoScan_CNV Annotations, SQLite Format, Release 33 (78 MB, 5/22/15)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.

Additional Support

Affymetrix Software Support Policy

OncoScan® Console 1.3 Software Release Notes (pdf, 91 KB)

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