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Rat Genome U34 Set

This GeneChip® array set is available through the GeneChip Made-to-Order Program which enables you to purchase selected custom array designs and previous-generation GeneChip arrays no longer available as catalog products. Learn more about ordering and support of GeneChip Made-to-Order arrays.

The Rat Genome U34 Set, consisting of three GeneChip® arrays, contains probe sets interrogating more than 24,000 mRNA transcripts and EST clusters from the UniGene database (Build 34).

Array A of the set analyzes approximately 7,000 full-length sequences and approximately 1,000 EST clusters. Arrays B and C each analyze approximately 8,000 EST clusters. All of the sequences analyzed by the Rat Toxicology U34 Array and the Rat Neurobiology U34 Array are also analyzed by Array A of this set.

For more information, please review the data sheet (pdf, 145 KB).

Data Sheets

Made-to-Order Program (pdf, 144 KB)

Technical Notes

Annotation Methodology

Manufacturing Quality Control and Validation Studies of GeneChip® Arrays (pdf, 3.28 MB)

Part #	Description	Details
510338	Rat Genome U34A	contains 1 array - Order Size: 40 +/- 5 arrays
510339	Rat Genome U34B	contains 1 array - Order Size: 40 +/- 5 arrays
510340	Rat Genome U34C	contains 1 array - Order Size: 40 +/- 5 arrays

FAQs

Gene Expression Arrays

Manuals

Alignment Data in PSL Format

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Probe Set Data in MAGE-ML Format

Array Comparisons

MGU74v2 to RGU34, Best Match (zip, 64 KB)

MGU74v2 to RGU34, Complex (zip, 33 MB)

MGU74v2 to RGU34, Good Match (zip, 66 KB)

MGU74v2 to RGU34, No Match (zip, 1 KB)

Mouse 430 to RGU34, Best Match (zip, 84 KB)

Mouse 430 to RGU34, Complex (zip, 44 MB)

Mouse 430 to RGU34, Good Match (zip, 89 KB)

Mouse 430 to RGU34, No Match (zip, 1 KB)

RGU34 to Rat 230, Best Match (zip, 417 KB)

RGU34 to Rat 230, Complex (zip, 16 MB)

RGU34 to Rat 230, Good Match (zip, 425 KB)

RGU34 to Rat 230, No Match (zip, 1 KB)

Library Files

Rat Genome U34 Set (zip, 15 MB)

Package Inserts

Rat Genome U34 Set (pdf, 89 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

RG_U34A Alignments To Genome, PSL Format (1.1 MB, 11/17/06)

RG_U34B Alignments To Genome, PSL Format (607 KB, 11/17/06)

RG_U34C Alignments To Genome, PSL Format (642 KB, 11/17/06)

Current NetAffx Annotation Files

RG_U34A Annotations, CSV format, Release 30 (3.3 MB, 11/15/09)

RG_U34B Annotations, CSV format, Release 30 (1.9 MB, 11/15/09)

RG_U34C Annotations, CSV format, Release 30 (2.2 MB, 11/15/09)

RG_U34A Annotations, MAGE-ML XML Format, Release 30 (16 MB, 11/15/09)

RG_U34B Annotations, MAGE-ML XML Format, Release 30 (10 MB, 11/15/09)

RG_U34C Annotations, MAGE-ML XML Format, Release 30 (11 MB, 11/15/09)

RG_U34A BLASTP annotations, CSV Format, Release 30 (8.5 KB, 11/16/09)

RG_U34B BLASTP annotations, CSV Format, Release 30 (11 KB, 11/16/09)

RG_U34C BLASTP annotations, CSV Format, Release 30 (14 KB, 11/16/09)

RG_U34A Orthologs/Homologs, CSV Format, Release 30 (2.5 MB, 11/15/09)

RG_U34B Orthologs/Homologs, CSV Format, Release 30 (1.8 MB, 11/15/09)

RG_U34C Orthologs/Homologs, CSV Format, Release 30 (2.0 MB, 11/15/09)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.