Scientific Publications
Most comprehensive whole-genome array set for discovering novel RNA transcripts
- Only commercially available whole-genome array set for human transcript mapping
- High density 35-bp probe resolution offers a more accurate view of novel RNA transcripts
- 25-mer probes offer the most specific hybridization results
Array Profile
The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions.
Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes.
Instrument and Software Requirements
Data Sheets
Human Tiling Arrays (pdf, 260 KB)
Archived Presentations
Scientific Forum, 1st European ChIP-on-chip
Webinar, Six-part ChIP-on-chip Symposia Series
Application Notes
| Part # | Description | Details |
|---|---|---|
| 900774 | GeneChip® Human Tiling 1.0R Array Set | 14 Arrays |
Related Products
| Part # | Description | Details |
|---|---|---|
| Integrated Genome Browser (IGB) | Available Via Download | |
| Affymetrix® Tiling Analysis Software (TAS) | Available Via Download | |
| 900301 | Control Oligo B2, 3nM | Sufficient for 30 samples |
| 900812 | GeneChip® WT Double-Stranded DNA Terminal Labeling Kit | Sufficient for 30 reactions |
| 900811 | GeneChip® WT Amplified Double-Stranded cDNA Synthesis Kit | Sufficient for 10 reactions |
Manuals
Whole Transcript (WT) Double-Stranded Target Assay (pdf, 751 KB)
Tutorial
Tiling Analysis Software Tutorial
Material Safety Data Sheets
WT Amplified Double-Stranded cDNA Synthesis Kit (zip, 228 KB)
WT Double-Stranded cDNA Synthesis Kit (zip, 166 KB)
WT Double-Stranded DNA Terminal Labelling Kit (zip, 158 KB)
Library Files
GeneChip Tiling Arrays - Data Analysis Library File Updates
Human Genome 2.0 Tiling Array Set NCBIv36 bed file
Human Genome 2.0 Tiling Array Set NCBIv36 BPMAP files
Human Genome 2.0 Tiling Array Set NCBIv36 probe bed files
Human Tiling 1.0R Array Set (zip, 1 GB)
Package Inserts
Human Tiling 1.0R Array Set (pdf, 77 KB)




