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Affymetrix Human Gene 1.1 ST Array Strip

Affymetrix® Human Gene 1.1 ST Array Strips enable you to perform low- and medium-throughput expression analysis with minimum hands-on time while using the same industry-standard content as the GeneChip┬« Human Gene 1.0 ST Array.

Affymetrix Human Gene 1.1 ST Array Strip

Part # Description Details

Manuals

Expression Console™ Software (pdf, 6 MB)

GeneAtlas® WT Expression Kit, User Manual (pdf, 1.20 MB)

Sample Attribute Editor (pdf, 597 KB)

SensationPlus™ FFPE Amplification and WT Labeling Kit (pdf, 391 KB)

Transcriptome Analysis Console (pdf, 7 MB)

WT Pico Kit User Guide (pdf, 1.8 MB)

WT PLUS Reagent Kit User Manual (pdf, 2 MB)

Quick Reference Cards

Array Strip Hybridization Cocktail Preparation Quick Reference Card (pdf, 270 KB)

Expression Console Quick Reference Card (pdf, 1.13 MB)

Library Files

GeneChip Human Gene Array 2.1 TAC Configuration File

GeneChip® Human Gene Array 1.1 TAC Configuration File

Human Gene 1.1 ST Array Plate and Strip, Analysis (zip, 17 MB)

Human Gene 2.1 ST Array

Package Inserts

Gene ST Array Strip (pdf, 579 KB)

GeneAtlas® HWS for WT PI (pdf, 82 KB)

GeneAtlas® Hybridization, Wash, and Stain Kit for WT Array Strips (pdf, 82 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

HuGene-2_1-st-v1 BED File (20 MB, 8/23/12)

HuGene-1_1-st-v1 BED File, GRCh37 (15 MB, 3/7/13)

Design Time Annotation Files

HuGene-2_1-st-v1 Design Time Annotations, Full, GFF Format (66 MB, 8/9/12)

HuGene-2_1-st-v1 Design Time Annotations, Probeset, CSV Format (17 MB, 7/27/12)

Note: For gene level analysis you will need to download one of the probeset level annotation zip files (CSV) to get the meta-probeset lists. None of these files contain textual biological annotations such as gene name or GO annotations; textual biological information can be found in the NetAffx Transcript CSV file. The design time Probeset CSV file provides information about the probeset such as genome coordinate and supporting annotation types. This is a subset of information found in the NetAffx Probeset CSV file. The Probeset CSV file is also a subset of the Full GFF files which contain transcript cluster, exon cluster, probeset, and probe level annotations. The GFF files also contain information about the specific annotations supporting each of the probesets. For example, use the Full GFF files for pulling design time information into a local database. The Mappings TSV file contains mappings between other arrays and annotations.

Current NetAffx Annotation Files

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 36 (23 MB, 7/6/16)

HuGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 36 (24 MB, 7/6/16)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 36 (79 MB, 7/6/16)

HuGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 36 (79 MB, 7/6/16)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

HuGene-2_1-st-v1 Probe Sequences, FASTA format (31 MB, 8/1/12)

HuGene-1_1-st-v1 Probe Sequences, FASTA format (25 MB, 11/20/09)

HuGene-2_1-st-v1 Probe Sequences, tabular format (25 MB, 8/1/12)

HuGene-1_1-st-v1 Probe Sequences, tabular format (21 MB, 11/20/09)

HuGene-2_1-st-v1 Transcript Cluster Sequences, FASTA format (36 MB, 8/1/12)

HuGene-1_1-st-v1 Transcript Cluster Sequences, FASTA format (21 MB, 11/20/09)

Archived NetAffx Annotation Files

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 29 (9.6 MB, 9/21/09)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 30 (10 MB, 1/22/10)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 30 (10 MB, 11/12/09)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 31 (10 MB, 9/3/10)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 32 (10 MB, 9/30/11)

HuGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 32 (12 MB, 8/1/12)

HuGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 33 (14 MB, 11/15/12)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 33.2 (9.7 MB, 3/27/13)

HuGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 33.2 (14 MB, 4/2/13)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 34 (10 MB, 4/7/14)

HuGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 34 (17 MB, 4/7/14)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 34.1 (12 MB, 7/23/14)

HuGene-1_1-st-v1 Probeset Annotations, CSV Format, Release 35 (15 MB, 4/15/15)

HuGene-2_1-st-v1 Probeset Annotations, CSV Format, Release 35 (21 MB, 4/15/15)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 29 (14 MB, 9/21/09)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 30 (17 MB, 11/12/09)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 31 (17 MB, 9/3/10)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 32 (18 MB, 6/23/11)

HuGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 32 (19 MB, 7/24/12)

HuGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 33 (32 MB, 11/15/12)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (17 MB, 3/27/13)

HuGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 33.2 (30 MB, 4/1/13)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 34 (14 MB, 4/7/14)

HuGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 34 (46 MB, 4/7/14)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 34.1 (20 MB, 7/23/14)

HuGene-1_1-st-v1 Transcript Cluster Annotations, CSV, Release 35 (52 MB, 4/15/15)

HuGene-2_1-st-v1 Transcript Cluster Annotations, CSV, Release 35 (64 MB, 4/15/15)

Additional Support

Fluidics Scripts

Probe Set Data in Tabular Format

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