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GeneChip® Canine Genome 2.0 Array

Canis familiaris is an important model organism for biomedical research of human disease conditions. The GeneChip® Canine Genome 2.0 Array enables researchers to simultaneously interrogate 18,000 C. familiaris mRNA/EST-based transcripts and over 20,000 non-redundant predicted genes.

Sequence information for this array includes content from Canis familiaris UniGene Build #11 (April, 2005), GenBank® mRNAs up to April 15, 2005, as well as the BROADD1 gene predictions from the boxer dog genome, downloaded from EBI on May 9, 2005. Purchasers of the array will have access to detailed sequence information via CD library files and through the online NetAffx™ Analysis Center.

Instrument Software Requirements


*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions (serial number series 501) will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.

Part # Description Details
900725 GeneChip® Canine Genome 2.0 Array Contains 2 arrays
900726 GeneChip® Canine Genome 2.0 Array Contains 6 arrays
900727 GeneChip® Canine Genome 2.0 Array Contains 30 arrays

Related Products

Part # Description Details
Assays and Reagents See Product Page

FAQs

Gene Expression Arrays

Manuals

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Array Comparisons

Canine to Canine 2.0 Best Match

Canine to Canine 2.0 Complex

Canine to Canine 2.0 Good Match

Canine to Canine 2.0 No Match

Canine to HG-U133 Plus, All (zip, 433 KB)

Canine to HG-U133 Plus, Best Match (zip, 19 KB)

Canine to HG-U133 Plus, Good Match (zip, 20 KB)

Canine to HG-U133 Plus, No Match (zip, 30 KB)

Canine to MOE430, All (zip, 313 KB)

Canine to MOE430, Best Match (zip, 5 KB)

Canine to MOE430, Good Match (zip, 5 KB)

Canine to MOE430, No Match (zip, 37 KB)

Canine to RAE230, All (zip, 224 KB)

Canine to RAE230, Best Match (zip, 5 KB)

Canine to RAE230, Good Match (zip, 5 KB)

Canine to RAE230, No Match (zip, 42 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

Current NetAffx Annotation Files

Canine Annotations, CSV format, Release 36 (6.0 MB, 4/13/16)

Canine Orthologs/Homologs, CSV Format, Release 36 (7.1 MB, 4/13/16)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

Canine Consensus Sequences, FASTA (5.9 MB, 8/20/08)

Canine Control Sequences, FASTA (20 KB, 6/28/05)

Canine Probe Sequences, FASTA (4.6 MB, 8/20/08)

Canine Probe Sequences, Tabular (4.1 MB, 8/20/08)

Canine Target Sequences, FASTA (3.8 MB, 8/20/08)

Archived NetAffx Annotation Files

Canine Annotations, BLASTP, Release 20 (1.6 MB, 7/14/06)

Canine Annotations, BLASTX, Release 20 (1.6 MB, 6/23/04)

Canine Annotations, CSV format, Release 21 (3.9 MB, 5/31/07)

Canine Annotations, CSV format, Release 22 (3.9 MB, 5/31/07)

Canine Annotations, CSV format, Release 23 (3.8 MB, 7/12/07)

Canine Annotations, CSV format, Release 24 (3.8 MB, 11/6/07)

Canine Annotations, CSV format, Release 25 (3.8 MB, 3/18/08)

Canine Annotations, CSV format, Release 26 (3.6 MB, 7/8/08)

Canine Annotations, CSV format, Release 27 (3.5 MB, 11/30/08)

Canine Annotations, CSV format, Release 28 (3.5 MB, 3/12/09)

Canine Annotations, CSV format, Release 29 (3.6 MB, 7/1/09)

Canine Annotations, CSV format, Release 30 (3.6 MB, 11/15/09)

Canine Annotations, CSV format, Release 31 (3.6 MB, 8/11/10)

Canine Annotations, CSV format, Release 32 (3.6 MB, 6/9/11)

Canine Annotations, CSV format, Release 33 (4.5 MB, 10/30/12)

Canine Annotations, CSV format, Release 34 (4.9 MB, 1/23/14)

Canine Annotations, CSV format, Release 35 (5.6 MB, 10/7/14)

Canine Annotations, CSV, Release 20 (3.8 MB, 5/31/07)

Canine Annotations, MAGE-ML XML format, Release 21 (26 MB, 6/15/07)

Canine Annotations, MAGE-ML XML Format, Release 22 (24 MB, 6/15/07)

Canine Annotations, MAGE-ML XML Format, Release 23 (22 MB, 7/12/07)

Canine Annotations, MAGE-ML XML Format, Release 24 (22 MB, 11/6/07)

Canine Annotations, MAGE-ML XML Format, Release 25 (22 MB, 3/18/08)

Canine Annotations, MAGE-ML XML Format, Release 26 (22 MB, 7/8/08)

Canine Annotations, MAGE-ML XML Format, Release 27 (23 MB, 11/24/08)

Canine Annotations, MAGE-ML XML Format, Release 28 (23 MB, 3/12/09)

Canine Annotations, MAGE-ML XML Format, Release 29 (23 MB, 7/1/09)

Canine Annotations, MAGE-ML XML Format, Release 30 (24 MB, 11/15/09)

Canine Annotations, MAGE-ML XML Format, Release 31 (24 MB, 8/11/10)

Canine Annotations, MAGE-ML XML Format, Release 32 (24 MB, 6/9/11)

Canine Annotations, MAGE-ML XML, Release 20 (24 MB, 6/15/07)

Canine Annotations, Orthologs, Release 20 (3.1 MB, 8/21/06)

Canine BLASTP annotations, CSV format, Release 21 (1.6 MB, 11/15/06)

Canine BLASTP annotations, CSV Format, Release 22 (154 KB, 3/9/07)

Canine BLASTP annotations, CSV Format, Release 23 (155 KB, 7/12/07)

Canine BLASTP annotations, CSV Format, Release 26 (600 B, 7/8/08)

Canine BLASTP annotations, CSV Format, Release 27 (193 KB, 11/24/08)

Canine BLASTP annotations, CSV Format, Release 28 (5.6 KB, 3/4/09)

Canine BLASTP annotations, CSV Format, Release 29 (684 B, 7/1/09)

Canine BLASTP annotations, CSV Format, Release 30 (768 B, 11/16/09)

Canine BLASTP annotations, CSV Format, Release 31 (768 B, 8/11/10)

Canine BLASTP annotations, CSV Format, Release 32 (387 B, 6/9/11)

Canine Orthologs/Homologs, CSV format, Release 21 (3.8 MB, 11/30/06)

Canine Orthologs/Homologs, CSV Format, Release 22 (4.3 MB, 3/9/07)

Canine Orthologs/Homologs, CSV Format, Release 23 (3.5 MB, 7/12/07)

Canine Orthologs/Homologs, CSV Format, Release 24 (3.4 MB, 11/6/07)

Canine Orthologs/Homologs, CSV Format, Release 25 (3.4 MB, 3/18/08)

Canine Orthologs/Homologs, CSV Format, Release 26 (3.4 MB, 7/8/08)

Canine Orthologs/Homologs, CSV Format, Release 27 (3.7 MB, 11/24/08)

Canine Orthologs/Homologs, CSV Format, Release 28 (4.0 MB, 3/12/09)

Canine Orthologs/Homologs, CSV Format, Release 29 (3.9 MB, 7/1/09)

Canine Orthologs/Homologs, CSV Format, Release 30 (4.0 MB, 11/15/09)

Canine Orthologs/Homologs, CSV Format, Release 31 (4.0 MB, 8/11/10)

Canine Orthologs/Homologs, CSV Format, Release 32 (4.0 MB, 6/9/11)

Canine Orthologs/Homologs, CSV Format, Release 33 (5.2 MB, 10/30/12)

Canine Orthologs/Homologs, CSV Format, Release 34 (6.1 MB, 1/23/14)

Canine Orthologs/Homologs, CSV Format, Release 35 (7.0 MB, 10/7/14)

Additional Support

Fluidics Scripts

Probe Set Data in MAGE-ML Format

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