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Axiom™ Genome-Wide BOS 1 Array Plate

The Axiom™ Genome-Wide BOS 1 Array Plate features the highest genetic coverage of 10 commercially important cattle breeds of any microarray on the market.

The Axiom Genome-Wide BOS 1 Array Plate is designed to maximize genetic and physical SNP coverage and offers up to 35 percent more genetic coverage of commercially important cattle breeds, including Bos taurus, Bos indicus, as well as dairy and beef breeds. The array covers more than 640,000 validated1 SNP markers representing the genetic diversity of approximately 3 million SNPs from the Affymetrix Bovine Genomic Database.

Developed in collaboration with key scientists in the bovine genotyping industry, the Axiom Genome-Wide BOS 1 Array Plate enables accurate genetic merit evaluations, genome-wide association studies to identify variations associated with disease, drug response, and other economically important traits, as well as biodiversity research and linkage disequilibrium (LD) studies.

FAQs

FAQ, Axiom® Genome-Wide BOS 1 Array Plate (pdf, 255 KB)

Manuals

Axiom® 2.0 Assay Automated Workflow Site Prep Guide (pdf, 685 KB)

Axiom® 2.0 Assay Automated Workflow User Guide (pdf, 6.58 MB)

Axiom® 2.0 Assay Manual Workflow Site Prep Guide (pdf, 139 KB)

Axiom® 2.0 Assay Manual Workflow User Guide (pdf, 4.56 MB)

Axiom® Genotyping Solution Data Analysis Guide (pdf, 11 MB)

Quick Reference Cards

Axiom® 2.0 Automated Target Prep Protocol (pdf, 566 KB)

Axiom® gDNA Sample Prep for Genome-Wide BOS 1 Array Plate (pdf, 92 KB)

GeneTitan® MC Protocol for Axiom® Array Plate Processing (pdf, 1.43 MB)

Material Safety Data Sheets

Axiom® 2.0 Reagent Kit (zip, 547 KB)

Library Files

AGCC 3.x Axiom® Genome-Wide BOS 1 Array Plate, GeneTitan MC library files, r3

Axiom® Genome-Wide BOS 1 Array Plate Analysis Files (zip, 107 MB)

Axiom® Genome-Wide BOS 1 Array Plate, Annotation Converter (12 KB)

Axiom® Genome-Wide BOS 1 Array Plate Analysis Files, r3 (zip, 86 MB)

Axiom® Genome-Wide BOS 1 Array Plate, Annotation Converter, r3 (zip, 6 KB)

Package Inserts

Axiom 2.0 Reagent Kit for 24-, 96- and 384 array plates (pdf, 992 KB)

Axiom® Genome-Wide BOS 1 Array Plate (pdf, 108 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

Axiom_GW_Bos_SNP_1 BED File (5.9 MB, 4/15/15)

Current NetAffx Annotation Files

Axiom_GW_Bos_SNP_1 Annotations, CSV format, Release 35 (151 MB, 4/15/15)

Axiom_GW_Bos_SNP_1 Annotations, SQLite Format, Release 35 (211 MB, 11/10/16)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.

Archived NetAffx Annotation Files

Axiom_GW_Bos_SNP_1 Annotations, CSV format, Release 32 (157 MB, 8/15/11)

Axiom_GW_Bos_SNP_1 Annotations, CSV format, Release 33 (149 MB, 5/17/13)

Axiom_GW_Bos_SNP_1 Annotations, CSV format, Release 34 (150 MB, 8/29/13)

Axiom_GW_Bos_SNP_1 Annotations, SQLite Format, Release 32 (219 MB, 8/16/11)

Axiom_GW_Bos_SNP_1 Annotations, SQLite Format, Release 33 (201 MB, 5/17/13)

Axiom_GW_Bos_SNP_1 Annotations, SQLite Format, Release 34 (203 MB, 10/28/13)

Additional Support

Instrument Service Contracts

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