Scientific Publications
GeneChip® Arabidopsis Tiling 1.0R Array is a versatile whole-genome research tool:
- Most comprehensive Arabidopsis microarray offering high-density 35 base pair probe resolution
- High-density array design is compatible with many research applications
- 25-mer probes yield the most specific hybridization results available
Array Profile
The GeneChip® Arabidopsis Tiling 1.0R Array is designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments. The Arabidopsis 1.0R Array is a single array comprised of over 3.2 million probe pairs tiled through the complete non-repetitive Arabidopsis thaliana genome. Sequences used in the design of the Arabidopsis Tiling 1.0R Array were selected from NCBI Arabidopsis genome assembly (Version 5). Mitochondrial and chloroplast sequences were selected from NCBI (Accession numbers NC_001284 and NC_000932). Probes are tiled at an average of 35 base pair resolution, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 base pairs between probes.
Instrument and Software Requirements
Visit the Affymetrix ChIP-on-Chip Web Forum and share protocols, experiences, hints and tips on best practices for ChIP-on-chip and MeDIP-on-chip applications. Free registration is required to view or create posts.
Archived Presentations
Scientific Forum, 1st European ChIP-on-chip
Webinar, Six-part ChIP-on-chip Symposia Series
Application Notes
Manuals
Chromatin Immunoprecipitation Assay Protocol (pdf, 679 KB)
Whole Transcript (WT) Double-Stranded Target Assay (pdf, 751 KB)
Tutorial
Tiling Analysis Software Tutorial
Library Files
Arabidopsis Genome Tiling Array TIGRv5 probe bed file
Arabidopsis Tiling 1.0R Array (zip, 120 MB)
GeneChip Tiling Arrays - Data Analysis Library File Updates
Package Inserts
Arabidopsis Tiling 1.0R Array (pdf, 249 KB)
Additional Support
Sample transcript mapping data with the Arabidopsis Tiling 1.0R Array (zip, 21 MB)




