GeneChip^® Arabidopsis ATH1 Genome Array

Overview

Literature

How to Order

Tools & Data

The GeneChip® Arabidopsis ATH1 Genome Array, designed in collaboration with TIGR, contains more than 22,500 probe sets representing approximately 24,000 genes.

The array is based on information from the international Arabidopsis sequencing project that was formally completed in December, 2000. In parallel and subsequent to the genome's completion, TIGR reannotated the entire genome in a project funded by the National Science Foundation and the resulting data was used in the design of this array. Data from the TIGR database (ATH1-121501) is hosted in the NetAffx™ Analysis Center.

For more information, please review the data sheet (pdf, 86 KB).

Data Sheets

Arabidopsis ATH1 Genome Array (pdf, 86 KB)

Made-to-Order Program (pdf, 144 KB)

Technical Notes

Annotation Methodology

Manufacturing Quality Control and Validation Studies of GeneChip® Arrays (pdf, 3.28 MB)

Part #	Description	Details
900385	Arabidopsis Genome ATH1 Array	contains 5 arrays
900386	Arabidopsis Genome ATH1 Array	contains 30 arrays

Related Products

Part #	Description	Details
	Assays and Reagents

FAQs

Gene Expression Arrays

Manuals

3' IVT Express Kit User Manual (pdf, 1.17 MB)

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

HT 3' IVT Express Kit (pdf 8.41 MB)

Probe Set Data in MAGE-ML Format

Array Comparisons

ATGenome1 to ATH1-12501, Best Match (zip, 123 KB)

ATGenome1 to ATH1-12501, Complex (zip, 147 KB)

ATGenome1 to ATH1-12501, Good Match (zip, 123 KB)

ATGenome1 to ATH1-12501, No Match (zip, 2 KB)

Library Files

Arabidopsis ATH1 Genome Array (zip, 13 MB)

Package Inserts

Arabidopsis ATH1 Genome Array (pdf, 487 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

NetAffx Alignment Files

ATH1-121501 Alignments To Genome, PSL Format (2.5 MB, 11/17/06)

Current NetAffx Annotation Files

ATH1-121501 Annotations, CSV format, Release 30 (6.5 MB, 11/15/09)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 30 (31 MB, 11/15/09)

ATH1-121501 BLASTP annotations, CSV Format, Release 30 (1.6 MB, 11/16/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 30 (1.8 MB, 11/15/09)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.