Genotyping Console™ 3.0 provides proven tools for genotyping and cytogenetic analysis alongside cutting-edge tools for copy number polymorphism (CNP) calling. Genotyping Console makes analysis easy with simple drop-down menus and visualization tools that let you get to your data fast and dip deeper for quality checking and biological meaning.

Download Information and Instructions
	Download Genotyping Console 3.0
	Genotyping Console 3.0 Analysis Files (zip, 861 MB)

New! Copy Number and LOH Analysis
Genotyping Console now includes calling algorithms and visualization tools for copy number polymorphism (CNP) analysis. CNP calls can be exported, just like SNP calls, and analyzed for statiscal association.

Figure 1: Heatmap view of a CNP in Genotyping Console 3.0

Genotyping Console also gives you unique tools for cytogenetic analysis. The figure below, from the Genotyping Console Browser, illustrates two regions of uniparental disomy, a type of abnormality common to Prader-Willi and Angelman Syndrome.

Figure 2
	Figure 2: Two regions of uniparental disomy

Genotyping Analysis
Genotyping Console streamlines whole-genome genotyping analysis and quality control. Version 3.0 implements robust genotyping algorithms—including Birdseed for Affymetrix Genome-Wide Human SNP Array 6.0, BRLMM-P for the SNP Array 5.0 and BRLMM for the Genechip® 500K Array Set —as well as cluster visualization (Figure 3) and flexible SNP filtering capabilities (Figure 4).

You can generate per-SNP cluster graphs as well as pdf reports for batch analysis.

Figure 3	Figure 4
		Figure 3: SNP Array 6.0 genotype cluster Figure 4: Flexible SNP filtering capabilities