• GeneChip® Command Console® Software (AGCC) Version 1.0
  Affymetrix Software
• GeneChip® Operating Software
  Affymetrix Software
• GeneChip® Operating Software Server
  Affymetrix Software
• GeneChip® Data Transfer Tool (DTT)
  Affymetrix Software
• Expression Data Management
  GeneChip Compatible
• SNP Data Management
  GeneChip Compatible
• Laboratory Management
  GeneChip Compatible

DNA

• 
  Genotyping Console™ Software 2.1
  Affymetrix Tool
  * Updated on 02/22/08
  
• 
  GeneChip® Targeted Genotyping Analysis Software (GTGS)
  Affymetrix Software
  * Updated on 03/27/08
  
• GeneChip® Sequence Analysis Software (GSEQ) Version
  Affymetrix Software
• SNP Analysis
  GeneChip Compatible
• DNA Sequence Analysis
  GeneChip Compatible

EXPRESSION

• Expression Console™ Software Version 1.1.1
  Affymetrix Tool
• Exon Expression
  GeneChip Compatible
• Gene Expression
  GeneChip Compatible
• Regulation Analysis
  GeneChip Compatible
• Tiling Analysis Software (TAS)
  Affymetrix Tool

• Integrated Genome Browser (IGB)
  Affymetrix Tool
• NetAffx™ Analysis Center
  Affymetrix Resource
• Pathway/Network Analysis
  GeneChip Compatible