home login register your profile contact        
Affymetrix
Products Support Analysis Scientific Community Corporate Careers Shop Affymetrix Japan
APPLICATIONS
RESEARCH AREAS
DNA
Whole Genome
Targeted Genotyping
Sequence Analysis
Expression
Quantitation
Regulation
Toxicogenomics
Clinical
Research & Trials
Molecular Diagnostics
Fields of Study
PRODUCTS
GeneChip System
GeneChip Arrays
Assays & Reagents
Instruments
Software
NetAffx™ Analysis Center
TECHNOLOGY
Overview
Array Manufacturing
Combinatorial Chemistry
Probe Design and Selection
Mismatch Repair Detection
AFFYMETRIX PROGRAMS
Consortia-Designed Arrays
Core Labs
Developers' Network
GeneChip Compatible Software
GeneChip-compatible™ Software Solutions Catalog

We at Affymetrix understand that getting the most out of your experiments using GeneChip® Arrays depends on the available software tools to manage and analyze your microarray data.  As the applications for Affymetrix GeneChip® Arrays continue to grow in number, the available software tools also evolve in both variety and scope. Although it is always comforting to have the ability to choose the right tools for the job, such a variety of informatics solutions represents yet another decision to research. To help you select the right software tool for your needs, Affymetrix has collected below a series of applications.
Explore the Software Solutions Catalog
 

APPLICATION CATEGORY - DNA SEQUENCE ANALYSIS

This set of applications provides DNA sequence analysis tool for data coming from Affymetrix DNA Resequencing arrays or provides greater information about sequences represented on any class of Affymetrix microarrays.


Externally Supplied Tools (Commercial)
 
 
 

Biotique Local Integration System (BLIS)
BLIS | Technical Specs | Support | Sales | Biotique Systems, Inc.


The Biotique Local Integration System (BLIS) is an R&D enterprise integration solution that provides a web accessible environment for integrating, analyzing and sharing knowledge assets. BLIS brings Together people, projects, disparate data sources and workflow applications. Furthermore, BLIS integrates biological data in the public domain with in-house proprietary (subscribed) databases, commercial and custom micro array designs, and NetAffx annotations.

Designed for research executives, scientists and informatics experts alike, BLIS and its modules are licensed by over 60% of large pharmaceutical corporations, over 20% of small to medium pharmaceutical corporations, And two of the top fifteen chemical companies.


GenomeQuest Inc.’s GenomeQuest
GenomeQuest | Support | Sales | GeneQuest, Inc.

For the biologist who needs timely and comprehensive micro array annotation reports, GenomeQuest dramatically reduces the time spent searching databases and conducting sequence comparisons on entire lists of sequences. Its intuitive, easy-to-use software enables you to conduct your own searches, obtain best-fit answers to the search criteria you specify, and easily share your work with colleagues. GenomeQuest applies large-scale biological alignment methods to aid biological understanding based on the evolutionary linkage between two or more sequences. Built-in results analysis capabilities allow selection, sorting, and filtering of huge data sets of alignments and annotations based on species, gene names, protein families, and other scientific understanding linked to sequences and their annotations.

GenomeQuest integrates Affymetrix probe and target libraries for human, mouse, and rat whole genome array annotations with a worldwide network of transcript reference databases. Detailed reports are created automatically and can be published using Microsoft Office® or uploaded to popular micro array analysis packages. The system maintains continuous surveillance for new sequence information and sends email alerts to users when there is new information to discover. GenomeQuest is offered as a hosted ASP service, or alternately can be installed on customer servers providing security and integration with in-house data sets while requiring minimal administration. The system automatically updates itself with new sequence data from worldwide sequence repositories.


Genomatix's El Dorado
El Dorado | Technical Specs | Support | Sales | Genomatix

Genome annotation and analysis system with up-to-date annotations for more than 12 different organisms, comparative genomics (patent pending) and the world's largest quality checked promoter annotation. Input sequences (mRNA/genomic) are mapped to all genomes in seconds including splice site predictions. Promoter sequences of regulated transcripts identified by ChipInspector can be extracted for further analysis. Effects of SNPs in promoter regions on transcription factor binding are annotated based on Genomatix' MatInspector with its unique transcription factor binding site database. A direct link to Genomatix' sophisticated gene regulation tools enables the user to start sequence analysis right from the annotation.


Genomatix's GEMS Launcher
GEMS Launcher | Technical Specs | Support | Sales | Genomatix

Software and database package to analyze gene regulatory mechanisms on the molecular level. GEMS Launcher includes over 20 different software tools for promoter analysis, high quality data on transcription factor binding sites (TFBS), promoter modules and a gateway to the world's largest database of quality assessed mammalian promoters. The tools detect common organization in promoters of transcripts e.g. identified by ChipInspector. They search the promoter database for these motifs to detect additional potentially co-regulated genes, thereby facilitating design of target verification experiments. The tools using TFBS predictions are based on the gold standard MatInspector which is included in the package.

888-DNA-CHIP (888-362-2447) +44 (0) 1628 552550 feedback e-mail support terms of use privacy policy