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GeneChip® Rat Exon 1.0 ST Array

The Whole Transcript (WT) Sense Target Labeling Assay Has an Updated Protocol

With approximately four probes per exon and roughly 40 probes per gene, the GeneChip® Rat Exon 1.0 ST Array enables two complementary levels of analysis—gene expression and alternative splicing.

Multiple probes per exon enable "exon-level" analysis and allow you to distinguish between different isoforms of a gene. This exon-level analysis on a whole-genome scale opens the door to detecting specific alterations in exon usage that may play a central role in disease mechanism and etiology.

The second level is "gene-level" expression analysis, in which multiple probes on different exons are summarized into an expression value of all transcripts from the same gene.

Exon arrays provide the most comprehensive coverage of the genome, including empirically supported and predicted transcribed sequences, enabling the discovery of previously unidentified novel events.

Features of this integrated solution include:

  • Highest resolution expression analysis, interrogating over 850,000 exon clusters within the known and predicted transcribed regions of the entire genome. Read more...
  • Tailored GeneChip® Whole Transcript (WT) Assay and Reagents utilizing a random priming method for generating sense targets along the entire length of the transcripts. Read more...
  • Flexible data analysis solutions and comprehensive annotation, giving you the opportunity to explore and dissect the data in various user-defined workflows.

Learn more about the Rat Exon 1.0 ST Array Design Statistics
Learn more about the Rat Exon 1.0 ST Array Starter Pack

Read About
GeneChip® Exon Array System
Technical Note, Array Design for the Human Exon 1.0 ST Array (pdf, 348 KB)
GeneChip® Exon Array Data Analysis
GeneChip® Exon Array Sample Data
Technical Note, Identifying and Validating Alternative Splicing Events


Click here to review the "Exon Arrays for Expression" Symposia Series.

XRAY flash demos for exon expression analysis
View a two-minute demonstration of a typical workflow using Biotique's XRAY for the analysis of GeneChip® Exon Arrays (2:12)
View a two-minute demonstration on the interpretation of GeneChip® Exon Array data from Biotique's XRAY

Find individual probe sets on all GeneChip® expression arrays with Array Finder.

ORDERING INFORMATION

GeneChip® Rat Exon 1.0 ST Array
Part # Description
900820 GeneChip® Rat Exon 1.0 ST Array
Contains 2 arrays
900821 GeneChip® Rat Exon 1.0 ST Array
Contains 6 arrays
900822 GeneChip® Rat Exon 1.0 ST Array
Contains 30 arrays
900848 GeneChip® Rat Exon 1.0 ST Array Starter Pack
Contains 30 arrays and reagents for 30 reactions
Additionally, the Starter Pack includes on-site training with the following arrays and reagents:
GeneChip® Exon 1.0 ST Array, 10 pack
GeneChip® WT cDNA Synthesis and
Amplification Kit, 10 rxn
  GeneChip® WT Terminal Labeling Kit, 10 rxn
  GeneChip® Sample Cleanup Module, 30 rxn
  GeneChip® Eukaryotic Poly-A RNA Control Kit, ~100 rxn
  GeneChip® Hybridization Control Kit, 30 rxn
 
How to order products from Affymetrix.
 
Pricing Information
RELATED PRODUCTS
GeneChip® WT Sense Target Labeling and Control Reagents
GeneChip® Exon Array Data Analysis
GeneChip® Operating Software v1.3 or higher
GeneChip® Scanner 3000 7G
Expression Console™ Software
Affymetrix Power Tools (APT)
GeneChip® Data Transfer Tool
SUPPORT
Exon Array Challenges and Opportunities (pdf, 528 KB)
View More...
Exon Array System (pdf, 464 KB)
Exon Array Analysis
View More...
Rat Exon 1.0 ST Array Analysis (zip, 102 MB)
View More...
Whole Transcript (WT) Sense Target Labeling Assay (pdf, 1.12 MB)
Rat Exon 1.0 ST Array (pdf, 80 KB)
QC Metrics for Exon and Gene Design Expression Arrays (pdf, 123 KB)
Exon Array Dataset
Array Design for the Human Exon 1.0 ST Array (pdf, 348 KB)
View More...
Alternative Transcript Analysis Methods for Exon Arrays v1.1 (pdf, 79 KB)
View More...
ADDITIONAL SUPPORT
Exon Array Announcements
Probe Set Data in Tabular Format
Publications and References for Affymetrix® GeneChip® Exon Arrays (pdf, 147 KB)
All Support Materials for Rat Exon 1.0 ST Array
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