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GeneChip Compatible Software
Mapping 500K Array Set

The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays). The Mapping 500K Array Set uses the same proven assay as the GeneChip® Mapping 10K Array and Mapping 100K Set that has been validated in over 120 published studies in less than three years.

May 2006 - A series of updates to the Mapping 500K system is launched, including:

BRLMM, a new genotype calling algorithm. New and existing Mapping 500K Array Set data can now be re-analyzed to increase both call rates and accuracy.
96-well plate protocol, enabling faster and more consistent ramp-up to high throughput sample processing.

Benefits of the Mapping 500K Array Set include:

Consistently high coverage across different populations
    View Genome coverage of 500K SNPs
    Learn more about whole-genome association
Reference standard for whole-genome association
    Community creating database of >10,000 control samples
    Gain consortium to release Mapping 500K Array Set data to the public domain
Proven approach for discovery
    See list of nearly 250 publications (pdf, 159 KB) on mapping assay
    Download updated assay manual which includes protocol for 96-well plate processing
Broad compatibility with DNA sample collections
    250 ng of raw genomic DNA
    Compatible with whole-genome amplified DNA
Highest throughput on the market
    100 samples/week/instrument
    Learn more about GeneChip® Scanner 3000, with AutoLoader
Innovative solutions available for data analysis and management
    Learn about BRLMM, the new genotype calling algorithm
    Learn about GeneChip-compatible™ third-party software for downstream analysis

Find out more about Clontech's Titanium™ DNA Amplification Kit for use with the Whole Genome Sampling Assay.

Instrument and Software Requirements

GeneChip® Command Console® Software 1.0
Affymetrix® Genotyping Console Software 2.0
GeneChip® Fluidics Station 450
GeneChip® Hybridization Oven 640
GeneChip® Scanner 3000 7G
For more information, please review the data sheet (pdf, 192 KB).
ORDERING INFORMATION

GeneChip® Human Mapping 500K Array Set
Part # Description
900767 GeneChip® Human Mapping 250K Nsp Array
Contains 5 Mapping 250K Nsp Arrays
900768 GeneChip® Human Mapping 250K Nsp Array
Contains 30 Mapping 250K Nsp Arrays
901189 GeneChip® Human Mapping 250K Nsp Array
Contains 100 Mapping 250K Nsp Arrays
900769 GeneChip® Human Mapping 250K Sty Array
Contains 5 Mapping 250K Sty Arrays
900770 GeneChip® Human Mapping 250K Sty Array
Contains 30 Mapping 250K Sty Arrays
901188 GeneChip® Human Mapping 250K Sty Array
Contains 100 Mapping 250K Sty Arrays
900766 GeneChip® Human Mapping 250K Nsp Assay Kit
Sufficient for 30 reactions
900753 GeneChip® Human Mapping 250K Nsp Assay Kit
Sufficient for 100 reactions
900765 GeneChip® Human Mapping 250K Sty Assay Kit
Sufficient for 30 reactions
900754 GeneChip® Human Mapping 250K Sty Assay Kit
Sufficient for 100 reactions
 
How to order products from Affymetrix.
 
Pricing Information
RELATED PRODUCTS
GeneChip® Command Console® Software 1.0
Affymetrix® Genotyping Console Software 2.0
GeneChip® Human Mapping 100K Set
GeneChip® CustomSeq™ Resequencing Arrays
GeneChip® Application-Specific Fixed Assays
GeneChip® Custom SNP Kits
GeneChip® Universal Tag Arrays
GeneChip® Scanner 3000 Targeted Genotyping System
SUPPORT
Microarrays in Cancer Research (pdf, 423 KB)
GeneChip® Human Mapping 500K Array Set (pdf, 192 KB)
DNA Analysis Arrays
Mapping 250K Nsp Array (zip, 43 MB)
View More...
Mapping 500K Assay Manual (pdf, 3.4 MB)
View More...
Mapping 500K Array Set (pdf, 97 KB)
View More...
GeneChip® Mapping 500K Array Set (zip, .99 MB)
BRLMM Algorithm for Affymetrix Mapping Arrays (pdf, 278 KB)
ADDITIONAL SUPPORT
Fluidics Scripts
Mapping 500K Genotype Calls on 270 HapMap Samples
Mapping 500K Nsp Reference DNA Concordance (zip, 3.5 MB)
Mapping 500K Nsp Reference Genotype Calls (zip, 671 KB)
Mapping 500K Sample Data Set
Mapping 500K Sty Reference DNA Concordance (zip, 3.5 MB)
Mapping 500K Sty Reference Genotype Calls (zip, 612 KB)
Probe Set Data in Tabular Format
All Support Materials for Mapping 500K Array Set
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