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GeneChip Compatible Software
GeneChip® Human Mapping 100K Set
The GeneChip® Human Mapping 100K Set is part of a growing family of products for copy number analysis. It is comprised of a set of two arrays that provide the highest resolution copy number analysis using the proven, easy-to-use GeneChip® Mapping Assay. With a mean marker distance of 26 kb, the Mapping 100K Set provides the highest genomic coverage, giving researchers more power to detect changes in chromosomal copy number. The Mapping 100K Set is the only technology to provide both copy number and allele-specific information, allowing researchers to discover copy neutral changes.

The GeneChip Mapping 100K Set has also been used for other applications, including population genetics, linkage disequilibrium analysis, and whole-genome association studies. The new GeneChip® Mapping 500K Array Set provides more power to understand the genetic differences between individuals, and is the recommended product for these applications.

Benefits of the Mapping 100K Set include:

Copy number and allele-specific information from a single experiment
    Learn more about copy number analysis
Highest resolution analysis for copy number
    View coverage of 100,000 SNPs
Visualize copy number, genotype, and expression data within the context of the genome and gene annotations
    Learn more about the Integrated Genome Browser
Proven approach for copy number analysis
    See list of nearly 250 publications (pdf, 159 KB) on mapping assay
Growing family of publicly available analysis solutions
    Learn more about analysis solutions for copy number

Instrument and Software Requirements

GeneChip® Command Console® Software 1.0
Affymetrix® Genotyping Console 2.0
GeneChip® Fluidics Station 400 or Fluidics Station 450/250
GeneChip® Hybridization Oven
GeneChip® Scanner 3000 with high-resolution scanning patch
For more information, please review the data sheet (pdf, 1.5 MB).
ORDERING INFORMATION

GeneChip® Human Mapping 100K Set and Assay Kit
Part # Description
900518 GeneChip® Human Mapping 50K Array Xba 240
contains 30 Mapping 50K Xba Arrays
900523 GeneChip® Human Mapping 50K Array Hind 240
contains 30 Mapping 50K Hind Arrays
900520 GeneChip® Mapping 50K Xba Assay Kit
sufficient for 30 reactions
900521 GeneChip® Mapping 50K Hind Assay Kit
sufficient for 30 reactions
900807 GeneChip® Human Mapping 50K Xba Adaptor
sufficient for 30 reactions
900808 GeneChip® Human Mapping 50K Hind Adaptor
sufficient for 30 reactions
900534 PCR Primer 001
sufficient for 100 PCR reactions
 
How to order products from Affymetrix.
 
Pricing Information
RELATED PRODUCTS
GeneChip® Human Mapping 10K 2.0 Array
GeneChip® Human Mapping 500K Array Set
GeneChip® CustomSeq™ Resequencing Arrays
GeneChip® Application-Specific Fixed Assays
GeneChip® Custom SNP Kits
GeneChip® Universal Tag Arrays
GeneChip® Command Console® Software 1.0
Affymetrix® Genotyping Console Software 2.0
GeneChip® Scanner 3000 Targeted Genotyping System
PRODUCT UPDATES
Product Update, Scanner Update Application
SUPPORT
Microarrays in Cancer Research (pdf, 423 KB)
Human Mapping 100K Set (pdf, 172 KB)
DNA Analysis Arrays
Mapping 50K Hind 240 Array (zip, 16 MB)
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100K Mapping Assay Manual (pdf, 1.2 MB)
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Human Mapping 50K Array Xba 240 and Human Mapping 50K Array Hind 240 (pdf, 71 KB)
View More...
ADDITIONAL SUPPORT
Fluidics Scripts
Mapping 100k HapMap Trio Dataset
Mapping 50K Hind Reference DNA Concordance (zip, 3.5 MB)
Mapping 50K Hind Reference Genotype Calls (zip, 152 KB)
Mapping 50K Xba Reference DNA Concordance (zip, 3.5 MB)
Mapping 50K Xba Reference Genotype Calls (zip, 157 KB)
Probe Set Data in Tabular Format
All Support Materials for Mapping 100K Set
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