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Researchers who are interested in hypothesis-driven studies may use either standard catalog targeted genotyping panels (predefined human content specific or animal content specific panels) or custom targeted genotyping panels (sizes 3K, 5K, 10K or 20K panels). Targeted genotyping panels are available as standard and/or custom products and/or services to suit your particular research needs.

Products and Services for Targeted Genotyping
Affymetrix GeneChip® Targeted Genotyping References
   

Two new papers have been published which detail MIP technology and it's contribution to Targeted Genotyping. Click the PubMed links below to view the full abstracts.

Hardenbol P., et al. Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay. Genome Research 15: 269-75 (2005). PubMed

Moorhead M., et al. Optimal genotype determination in highly multiplexed SNP data.European Journal of Human Genetics 14: 207-15 (2006). PubMed .

Affymetrix Microarray Bulletin
Affymetrix GeneChip® Targeted Genotyping Publications
   

Affymetrix GeneChip® Bovine Mapping 10K Panel
Khatkar M. S., et al. A Primary Assembly of a Bovine Haplotype Block Map Based on a 15,036-Single-Nucleotide Polymorphism Panel Genotyped in Holstein-Friesian Cattle. Genetics 176:763-772 (2007).

Affymetrix GeneChip® Human DMET 1.0 Panel
Dumaual C., et al. Comprehensive assessment of metabolic enzyme and transporter genes using the Affymetrix Targeted Genotyping System. Pharmacogenomics 8 (3):293-305 (2007).

Affymetrix GeneChip® Human Immune and Inflammation 9K Panel
Zheng S. L., et al. A comprehensive Association Study for Gene in Inflammation Pathway Provides Support for Their Roles in Prostate Cancer Risk in the CAPS Study. The Prostate 66:1556-1564 (2006).

Affymetrix GeneChip® Human Panel 1 10K cSNP Panel
Smyth D. J., et al. A genome-wide association study of nonsynonymous SNPs identifies a type 1 diabetes locus in the interferon-induced helicase (IFIH1) region. Nature Genetics 38(6):617-619 (2006).

Zanke B. W., et al. Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24. Nature Genetics Epub (2007).

Affymetrix GeneChip® Mouse Mapping 5K Panel
Laurie C. C., Nickerson D. A., Anderson A. D., Weir B. S., Livingston R. J., et al. Linkage Disequilibrium in Wild Mice. PLoS Genet 3(8):e144 (2007).

Custom Affymetrix GeneChip® Targeted Genotyping Panel
Smith E. M., et al. Comparison of linkage disequilibrium patterns between the HapMap CEPH samples and a family-based cohort of Northern European descent. Genomics 88:407-414 (2006).

Affymetrix Microarray Bulletin
  Featured Articles
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Targeted Genotyping Bovine 25K SNP ServiceAffymetrix Introduces Targeted Genotyping Bovine 25K SNP Service
Targeted genotyping bovine assay panel enables researchers to perform genome-wide association studies
Read UserForum article

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