Biotique

Genomatix

JMP

Partek

DNAStar

Genedata

Rosetta

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Yes

Supports Exon at the gene level

Yes

No

Yes

Yes

Yes

Yes

Yes

Yes

Yes

–

Regulation (ChIP-on-chip)

SNP Analysis

Regulation
(ChIP-on-chip)

SNP Association

Copy Number

–

–

SNP analysis available in Rosetta Syllego™ System

Fast, wizard-driven Microsoft Excel plug-in offering expression analysis

Integrated NetAffx® annotations

Complete method disclosure

Familiar Excel user interface

Analysis based on single probes

Single-probe curation based on latest genome annotation

Currently 37 arrays (12 genomes) supported, including promoter tiling

Tight integration with other downstream Genomatix tools to derive greater biological insight

Powerful SAS analytics enhanced by interactive JMP graphics

Sophisticated, automated experimental design tools

Quality-control tools including batch effect removal

Extensive predictive modeling capabilities

Fast and memory-efficient

Comprehensive statistics and interactive visualization

Remove batch effects

Workflows for exon, copy number, and tiling

Ease of use

Friendly perpetual license model

Support on both Windows XP and Vista

Automated annotation download from NetAffx Analysis Center

Automated quality assessment and pre-processing

Standardized workflows for biomarker discovery

Integration with proteomic and metabolomic data

Open analysis framework

Ability to perform cross-species

Ability to perform cross-technology analyses (e.g., comparisons of qPCR versus microarrays)

Support for 21 CFR Part 11, as validated by industry audits

Data management and a data repository capable of growing with the research needs of your organization

XRAY Demo

Genomatix
ChipInspector

JMP Genomics
Demo

Partek
Classification

Coming
soon

Coming
soon