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GeneChip Arabidopsis ATH1 Genome Array

The GeneChip Arabidopsis ATH1 Genome Array, designed in collaboration with TIGR, contains more than 22,500 probe sets representing approximately 24,000 genes.

Part # Description Unit Size Your Price (USD)
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900385
Arabidopsis Genome ATH1 Array
contains 5 arrays    Please Inquire
900386
Arabidopsis Genome ATH1 Array
contains 30 arrays    Please Inquire
     

The GeneChip® Arabidopsis ATH1 Genome Array, designed in collaboration with TIGR, contains more than 22,500 probe sets representing approximately 24,000 genes.

The array is based on information from the international Arabidopsis sequencing project that was formally completed in December, 2000. In parallel and subsequent to the genome's completion, TIGR reannotated the entire genome in a project funded by the National Science Foundation and the resulting data was used in the design of this array. Data from the TIGR database (ATH1-121501) is hosted in the NetAffx™ Analysis Center.

For more information, please review the data sheet (pdf, 86 KB).

For research use only. Not for use in diagnostic procedures.

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Brochures

The GeneChip System: An Integrated Solution for Expression and DNA Analysis (pdf, 228 KB)

Comparison Sheets / Array Comparisons

ATGenome1 to ATH1-12501, Best Match (zip, 123 KB)

ATGenome1 to ATH1-12501, Complex (zip, 147 KB)

ATGenome1 to ATH1-12501, Good Match (zip, 123 KB)

ATGenome1 to ATH1-12501, No Match (zip, 2 KB)

Data Sheets

Arabidopsis ATH1 Genome Array (pdf, 86 KB)

Made-to-Order Program (pdf, 144 KB)

Library Files

Arabidopsis ATH1 Genome Array (zip, 13 MB)

Manuals

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Probe Set Data in MAGE-ML Format

3' IVT Express Kit User Manual (pdf, 1.6 MB)

HT 3' IVT Express Kit (pdf 5.93 MB)

Package Inserts

Arabidopsis ATH1 Genome Array (pdf, 487 KB)

Protocol, Long

Gene Expression Arrays

Technical Notes

Annotation Methodology

Manufacturing Quality Control and Validation Studies of GeneChip Arrays (pdf, 3.28 MB)

Other

Fluidics Scripts

NetAffx Alignment Files

ATH1-121501 Alignments To Genome, PSL Format (3 MB 11/17/06)

NetAffx Annotation Files

ATH1-121501 BLASTP annotations, CSV Format, Release 32 (3 KB 06/09/11)

ATH1-121501 Annotations, CSV format, Release 32 (6 MB 06/09/11)

ATH1-121501 BLASTP annotations, CSV Format, Release 31 (2 MB 08/11/10)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 32 (30 MB 06/09/11)

ATH1-121501 Annotations, CSV format, Release 31 (7 MB 08/11/10)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 31 (2 MB 08/11/10)

ATH1-121501 Annotations, CSV format, Release 30 (7 MB 11/15/09)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 30 (33 MB 11/15/09)

ATH1-121501 BLASTP annotations, CSV Format, Release 30 (2 MB 11/16/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 30 (2 MB 11/15/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 32 (2 MB 06/09/11)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 31 (33 MB 08/11/10)

Sequence Files

ATH1-121501 Control Sequences, FASTA (18 KB 03/28/03)

ATH1-121501 Exemplar Sequences, FASTA (20 MB 05/26/04)

ATH1-121501 Probe Sequences, FASTA (5 MB 08/20/08)

ATH1-121501 Probe Sequences, Tabular (4 MB 08/20/08)

ATH1-121501 Target Sequences, FASTA (4 MB 08/20/08)

Archived NetAffx Annotation Files

ATH1-121501 Orthologs/Homologs, CSV format, Release 21 (1 MB 11/30/06)

ATH1-121501 BLASTP annotations, CSV format, Release 21 (2 MB 11/15/06)

ATH1-121501 Annotations, MAGE-ML XML format, Release 21 (30 MB 06/15/07)

ATH1-121501 Annotations, CSV format, Release 21 (5 MB 05/31/07)

ATH1-121501 Annotations, MAGE-ML XML, Release 20 (30 MB 06/15/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 25 (27 MB 03/18/08)

ATH1-121501 BLASTP annotations, CSV Format, Release 25 (5 KB 03/18/08)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 25 (1 MB 03/18/08)

ATH1-121501 Annotations, CSV, Release 20 (5 MB 05/31/07)

ATH1-121501 Annotations, BLASTP, Release 20 (2 MB 07/14/06)

ATH1-121501 Annotations, Orthologs, Release 20 (1 MB 08/21/06)

ATH1-121501 Annotations, CSV format, Release 25 (5 MB 03/18/08)

ATH1-121501 Annotations, CSV format, Release 22 (5 MB 05/31/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 22 (30 MB 06/15/07)

ATH1-121501 BLASTP annotations, CSV Format, Release 22 (2 MB 03/09/07)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 22 (1 MB 03/09/07)

ATH1-121501 Annotations, CSV format, Release 23 (5 MB 07/12/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 23 (29 MB 07/12/07)

ATH1-121501 BLASTP annotations, CSV Format, Release 23 (2 MB 07/12/07)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 23 (1 MB 07/12/07)

ATH1-121501 Annotations, CSV format, Release 24 (5 MB 11/06/07)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 24 (27 MB 11/06/07)

ATH1-121501 BLASTP annotations, CSV Format, Release 24 (175 KB 11/06/07)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 24 (1 MB 11/06/07)

ATH1-121501 Annotations, CSV format, Release 26 (6 MB 07/08/08)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 26 (31 MB 07/08/08)

ATH1-121501 BLASTP annotations, CSV Format, Release 26 (2 MB 07/08/08)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 26 (1 MB 07/08/08)

ATH1-121501 Annotations, CSV format, Release 27 (6 MB 11/30/08)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 27 (31 MB 11/24/08)

ATH1-121501 BLASTP annotations, CSV Format, Release 27 (2 MB 11/24/08)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 27 (1 MB 11/24/08)

ATH1-121501 Annotations, CSV format, Release 28 (6 MB 03/12/09)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 28 (29 MB 03/12/09)

ATH1-121501 BLASTP annotations, CSV Format, Release 28 (2 KB 03/04/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 28 (2 MB 03/12/09)

ATH1-121501 Annotations, CSV format, Release 29 (7 MB 07/01/09)

ATH1-121501 Annotations, MAGE-ML XML Format, Release 29 (33 MB 07/01/09)

ATH1-121501 BLASTP annotations, CSV Format, Release 29 (2 MB 07/01/09)

ATH1-121501 Orthologs/Homologs, CSV Format, Release 29 (2 MB 07/01/09)

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