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GeneChip Xenopus laevis Genome 2.0 Array

The Affymetrix The Affymetrix GeneChip Xenopus laevis Genome 2.0 Array can be used to study the whole genome of Xeno® Xenopus laevis Genome 2.0 Array can be used to study the whole genome of Xenopus laevis on a single array.

Part # Description Unit Size Your Price (USD)
Qty
901214
GeneChip Xenopus laevis Genome 2.0 Array
contains 2 arrays    Please Inquire
901215
GeneChip Xenopus laevis Genome 2.0 Array
contains 6 arrays    Please Inquire
901216
GeneChip Xenopus laevis Genome 2.0 Array
contains 30 arrays    Please Inquire
     

The Affymetrix GeneChip® Xenopus laevis Genome 2.0 Array can be used to study the whole genome of Xenopus laevis on a single array. The array is comprised of more than 32,400 probe sets representing more than 29,900 X. laevis transcripts, and was designed in close collaboration with the Xenopus research community as part of the Affymetrix® GeneChip® Consortia Program. Sequences used in the design of the array were selected from the X. laevis UniGene build 69 (July 2006) and GenBank® mRNAs (through September 12, 2006).

X. laevis is one of the most important model organisms in developmental biology. Much of the current understanding of early embryonic development derives from experiments performed in the Xenopus embryo.

The GeneChip Xenopus laevis Genome 2.0 Array is designed specifically to monitor gene expression in X. laevis, providing significant utility in developmental studies, such as induction and over-expression. The Xenopus laevis 2.0 Array complements the GeneChip® Xenopus tropicalis Genome Array, which can be used to combine genetic approaches with the established strengths of X. laevis.

The GeneChip® Xenopus laevis Genome 2.0 Array is especially useful for researchers interested in identifying the genetic mechanisms critical to the following processes:

  • Primordial germ cell migration
  • Oocyte maturation
  • Programmed cell death
  • Pluripotency and lineage specificity
  • Nuclear transport
  • Patterning events
  • Chromosome replication
  • Chromatin assembly
  • Cell cycle progression
  • Intracellular signaling
  • Organogenesis
  • Oncogenesis

Array Annotations (Interim File)

The Affymetrix GeneChip Xenopus laevis Genome 2.0 Array annotation file contains design-time annotations, using both the original probe-set names and new probe-set names. New probe-set names were assigned to differentiate the probe-set identifiers for GeneChip Xenopus laevis Genome 2.0 Array from the older, version-1.0 array. The new naming convention for the version 2.0 array contains the prefix,"Xl2" for all probe-set identifiers, while the original probe-set IDs contain the prefix, "Xl."

Note: The Affymetrix GeneChip Xenopus laevis Genome 2.0 Array annotation file is being hosted on this site on an interim basis, until the annotations are transferred to NetAffx, where regular annotation updates to the GeneChip Xenopus laevis Genome 2.0 Array will be provided.

For research use only. Not for use in diagnostic procedures.

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Library Files

Xenopus laevis Genome 2.0 Array (zip, 22 MB)

Manuals

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Probe Set Data in MAGE-ML Format

3' IVT Express Kit User Manual (pdf, 1.6 MB)

HT 3' IVT Express Kit (pdf 5.93 MB)

Package Inserts

Xenopus laevis Genome 2.0 Array (pdf, 149 KB)

Protocol, Long

Gene Expression Arrays

Other

Fluidics Scripts

NetAffx Annotation Files

X_laevis_2 Annotations, MAGE-ML XML Format, Release 32 (34 MB 06/09/11)

X_laevis_2 Annotations, CSV format, Release 31 (5 MB 08/11/10)

X_laevis_2 BLASTP annotations, CSV Format, Release 32 (1 KB 06/09/11)

X_laevis_2 Annotations, MAGE-ML XML Format, Release 31 (34 MB 08/11/10)

X_laevis_2 BLASTP annotations, CSV Format, Release 31 (1 KB 08/11/10)

X_laevis_2 Probe set annotations and probe set renaming-table (4 MB 11/04/08)

X_laevis_2 Annotations, CSV format, Release 30 (5 MB 11/15/09)

X_laevis_2 Annotations, MAGE-ML XML Format, Release 30 (34 MB 11/15/09)

X_laevis_2 BLASTP annotations, CSV Format, Release 30 (1 KB 11/16/09)

X_laevis_2 Annotations, CSV format, Release 32 (5 MB 06/10/11)

Sequence Files

X_laevis_2 Probe Sequences, FASTA format (9 MB 01/13/09)

X_laevis_2 Probe Sequences, tabular format (8 MB 01/13/09)

X_laevis_2 Consensus Sequences FASTA Format (16 MB 01/13/09)

X_laevis_2 Control Sequences FASTA Format (64 KB 01/13/09)

X_laevis_2 Target Sequences FASTA Format (7 MB 01/13/09)

Archived NetAffx Annotation Files

X_laevis_2 Annotations, CSV format, Release 27 (5 MB 01/13/09)

X_laevis_2 Annotations, CSV format, Release 28 (5 MB 03/12/09)

X_laevis_2 Annotations, MAGE-ML XML Format, Release 28 (34 MB 03/12/09)

X_laevis_2 BLASTP annotations, CSV Format, Release 28 (1 KB 03/04/09)

X_laevis_2 Annotations, CSV format, Release 29 (5 MB 07/01/09)

X_laevis_2 Annotations, MAGE-ML XML Format, Release 29 (34 MB 07/01/09)

X_laevis_2 BLASTP annotations, CSV Format, Release 29 (1 KB 07/01/09)

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