GeneChip Wheat Genome Array
By providing comprehensive coverage of the wheat genome, the GeneChip® Wheat Genome Array is an important tool for plant genetics.
By providing comprehensive coverage of the wheat genome, the GeneChip® Wheat Genome Array is an important tool for plant genetics.
With applications in crop improvement and gene expression studies, the Wheat Genome Array can be used to study nutritional value, crop yield, and effects of environmental stresses on wheat.
- The array contains 61,127 probe sets representing 55,052 transcripts for all 42 chromosomes in the wheat genome.
- Use the Power of the Probe Set and get multiple independent measurements for each transcript that deliver the greatest accuracy and reproducibility of any microarray platform
- GeneChip® System: richer data, sharper insights, better decisions
Array Profile
The GeneChip® Wheat Genome Array offers researchers the most comprehensive and informative content for wheat gene expression research. The design of the array was based on public content from GenBank® and dbEST. Experts in wheat research provided high-quality sequence data, and the arrays were designed and manufactured with standard Affymetrix protocols.
Sequence information for the GeneChip Wheat Genome Array includes public content from Triticum aestivum UniGene Build #38 (build date April 24, 2004). Also included are ESTs from the wheat species T. monococcum, T. turgidum, and Aegilops tauschii, and GenBank® full-length mRNAs from all species through May 18, 2004.
T. aestivum, the hexaploid bread wheat, contains three genomes; A, B, and D. Triticum turgidum, the tetraploid macaroni wheat species, contains the ancestral A and B genomes, whereas the diploids T. monococcum and A. tauschii contain near relatives of the A and D genomes, respectively. Thus, available content for the modern bread wheat species' three ancestral genomes is included.
The Wheat Genome Array was created within the Affymetrix GeneChip® Consortia Program.
For research use only. Not for use in diagnostic procedures.
Data Sheets
Wheat Genome Array (pdf, 84KB)
Library Files
Wheat Genome Array (zip, 28 MB)
Manuals
Probe Set Data in MAGE-ML Format
3' IVT Express Kit User Manual (pdf, 1.6 MB)
HT 3' IVT Express Kit (pdf 5.93 MB)
Package Inserts
Wheat Genome Array (pdf, 516 KB)
Protocol, Long
Other
NetAffx Annotation Files
wheat Annotations, CSV format, Release 32 (7 MB 06/10/11)
wheat Annotations, MAGE-ML XML Format, Release 31 (38 MB 08/11/10)
wheat Annotations, CSV format, Release 31 (7 MB 08/11/10)
wheat Annotations, CSV format, Release 30 (7 MB 11/15/09)
wheat Annotations, MAGE-ML XML Format, Release 30 (38 MB 11/15/09)
wheat BLASTP annotations, CSV Format, Release 30 (4 KB 11/16/09)
wheat Annotations, MAGE-ML XML Format, Release 32 (38 MB 06/09/11)
wheat BLASTP annotations, CSV Format, Release 32 (4 KB 06/09/11)
Sequence Files
wheat Consensus Sequences, FASTA (14 MB 08/20/08)
wheat Control Sequences, FASTA (65 KB 11/17/04)
wheat Probe Sequences, FASTA (12 MB 08/20/08)
wheat Probe Sequences, Tabular (11 MB 08/20/08)
wheat Target Sequences, FASTA (7 MB 08/20/08)
Archived NetAffx Annotation Files
wheat Annotations, MAGE-ML XML, Release 20 (41 MB 06/15/07)
wheat Annotations, CSV, Release 20 (8 MB 05/31/07)
wheat Annotations, CSV format, Release 21 (8 MB 05/31/07)
wheat Annotations, MAGE-ML XML format, Release 21 (41 MB 06/15/07)
wheat BLASTP annotations, CSV format, Release 21 (69 KB 11/15/06)
wheat Annotations, CSV format, Release 22 (8 MB 05/31/07)
wheat Annotations, MAGE-ML XML Format, Release 22 (41 MB 06/15/07)
wheat BLASTP annotations, CSV Format, Release 22 (12 KB 03/09/07)
wheat Annotations, CSV format, Release 23 (8 MB 07/12/07)
wheat Annotations, MAGE-ML XML Format, Release 23 (41 MB 07/12/07)
wheat BLASTP annotations, CSV Format, Release 23 (9 KB 07/12/07)
wheat Annotations, CSV format, Release 24 (9 MB 11/06/07)
wheat Annotations, MAGE-ML XML Format, Release 24 (41 MB 11/06/07)
wheat BLASTP annotations, CSV Format, Release 24 (3 KB 11/06/07)
wheat Annotations, CSV format, Release 25 (8 MB 03/18/08)
wheat Annotations, MAGE-ML XML Format, Release 25 (41 MB 03/18/08)
wheat BLASTP annotations, CSV Format, Release 25 (4 KB 03/18/08)
wheat Annotations, CSV format, Release 26 (8 MB 07/08/08)
wheat Annotations, MAGE-ML XML Format, Release 26 (40 MB 07/08/08)
wheat Annotations, CSV format, Release 27 (7 MB 11/30/08)
wheat Annotations, MAGE-ML XML Format, Release 27 (39 MB 11/24/08)
wheat Annotations, CSV format, Release 28 (7 MB 03/12/09)
wheat Annotations, MAGE-ML XML Format, Release 28 (39 MB 03/12/09)
wheat BLASTP annotations, CSV Format, Release 28 (2 KB 03/04/09)
wheat Annotations, CSV format, Release 29 (7 MB 07/01/09)
wheat Annotations, MAGE-ML XML Format, Release 29 (39 MB 07/01/09)
wheat BLASTP annotations, CSV Format, Release 29 (2 KB 07/01/09)
Required Products