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GeneChip Porcine Genome Array

The GeneChip Porcine Genome Array is an important new tool for studying gene expression in the porcine animal model.

Part # Description Unit Size Your Price (USD)
Qty
900623
GeneChip Porcine Genome Array
contains 2 arrays    Please Inquire
900624
GeneChip Porcine Genome Array
contains 6 arrays    Please Inquire
900625
GeneChip Porcine Genome Array
contains 30 arrays    Please Inquire
     

The GeneChip® Porcine Genome Array is an important new tool for studying gene expression in the porcine animal model. Domestic pigs are an important food source and, because of the many anatomical and physiological similarities to humans, are also used extensively for medical research. In particular, the pig makes an excellent research model for wound repair, reproductive diseases, cancer, cardiovascular disease, and diabetes.

  • The Porcine Genome Array contains 23,937 probe sets to interrogate 23,256 transcripts in pig, which represents 20,201 genes.
  • Use the Power of the Probe Set and get multiple independent measurements for each transcript that delivers the greatest accuracy and reproducibility of any microarray platform.
  • GeneChip® System: richer data, sharper insights, better decisions.

Array Profile

The GeneChip® Porcine Genome Array provides comprehensive coverage of the Sus scrofa transcriptome. The array contains 23,937 probe sets that interrogate approximately 23,256 transcripts from 20,201 S. scrofa genes.

The sequence information for this array was selected from public data sources including UniGene Build 28 (August 2004), GenBank® mRNAs up to August 24, 2004, and GenBank porcine mitochondrial and rRNA sequences. Probe sets consist of up to eleven probe pairs. The array format consists of eleven micron features synthesized on the 100 format.

The Porcine Genome Array was created within the Affymetrix GeneChip® Consortia Program.

Instrument and Software Requirements

  • GeneChip Scanner 3000, enabled for High-Resolution Scanning*
  • GeneChip Operating Software (GCOS) v1.1.1 or higher, which includes the GeneChip Scanner 3000 High-Resolution Scanning Patch

*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions, serial number series 501, will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.

For research use only. Not for use in diagnostic procedures.

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Comparison Sheets / Array Comparisons

Porcine to HG-U133 Plus, No Match (zip, 28 KB)

Porcine to HG-U133 Plus, Best Match (zip, 109 KB)

Porcine to HG-U133 Plus, Complex (zip, 596 KB)

Porcine to HG-U133 Plus, Good Match (zip, 112 KB)

Comparison Spreadsheets User's Guide (pdf, 82 KB)

Data Sheets

Porcine Genome Array (pdf, 80 KB)

Library Files

Porcine Genome Array (zip, 13 MB)

Manuals

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Probe Set Data in MAGE-ML Format

3' IVT Express Kit User Manual (pdf, 1.6 MB)

HT 3' IVT Express Kit (pdf 5.93 MB)

Package Inserts

Porcine Genome Array (pdf, 493 KB)

Protocol, Long

Gene Expression Arrays

Other

Fluidics Scripts

NetAffx Annotation Files

Porcine Annotations, MAGE-ML XML Format, Release 32 (19 MB 06/22/11)

Porcine Annotations, MAGE-ML XML Format, Release 31 (18 MB 08/11/10)

Porcine BLASTP annotations, CSV Format, Release 32 (1 KB 06/09/11)

Porcine Annotations, CSV format, Release 32 (4 MB 06/22/11)

Porcine BLASTP annotations, CSV Format, Release 26 (3 KB 07/08/08)

Porcine Annotations, CSV format, Release 30 (4 MB 11/15/09)

Porcine Annotations, MAGE-ML XML Format, Release 30 (19 MB 11/15/09)

Porcine Annotations, CSV format, Release 31 (4 MB 08/11/10)

Sequence Files

Porcine Consensus Sequences, FASTA (7 MB 08/20/08)

Porcine Control Sequences, FASTA (79 KB 02/16/05)

Porcine Probe Sequences, FASTA (5 MB 08/20/08)

Porcine Probe Sequences, Tabular (5 MB 08/20/08)

Porcine Target Sequences, FASTA (4 MB 08/20/08)

Archived NetAffx Annotation Files

Porcine Annotations, MAGE-ML XML, Release 20 (19 MB 06/15/07)

Porcine Annotations, CSV, Release 20 (4 MB 05/31/07)

Porcine Annotations, BLASTP, Release 20 (199 KB 07/14/06)

Porcine Annotations, CSV format, Release 21 (4 MB 05/31/07)

Porcine Annotations, MAGE-ML XML format, Release 21 (20 MB 06/15/07)

Porcine BLASTP annotations, CSV format, Release 21 (193 KB 11/15/06)

Porcine Annotations, CSV format, Release 22 (4 MB 05/31/07)

Porcine Annotations, MAGE-ML XML Format, Release 22 (18 MB 06/15/07)

Porcine BLASTP annotations, CSV Format, Release 22 (10 KB 03/09/07)

Porcine Annotations, CSV format, Release 23 (4 MB 07/12/07)

Porcine Annotations, MAGE-ML XML Format, Release 23 (19 MB 07/12/07)

Porcine BLASTP annotations, CSV Format, Release 23 (9 KB 07/12/07)

Porcine Annotations, CSV format, Release 24 (3 MB 11/06/07)

Porcine Annotations, MAGE-ML XML Format, Release 24 (18 MB 11/06/07)

Porcine BLASTP annotations, CSV Format, Release 24 (1 KB 11/06/07)

Porcine Annotations, CSV format, Release 25 (3 MB 03/18/08)

Porcine Annotations, MAGE-ML XML Format, Release 25 (18 MB 03/18/08)

Porcine BLASTP annotations, CSV Format, Release 25 (1 KB 03/18/08)

Porcine Annotations, CSV format, Release 26 (4 MB 07/08/08)

Porcine Annotations, MAGE-ML XML Format, Release 26 (18 MB 07/08/08)

Porcine Annotations, CSV format, Release 27 (3 MB 11/30/08)

Porcine Annotations, MAGE-ML XML Format, Release 27 (18 MB 11/24/08)

Porcine Annotations, CSV format, Release 28 (3 MB 03/12/09)

Porcine Annotations, MAGE-ML XML Format, Release 28 (18 MB 03/12/09)

Porcine Annotations, CSV format, Release 29 (3 MB 07/01/09)

Porcine Annotations, MAGE-ML XML Format, Release 29 (18 MB 07/01/09)

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